Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AC105250.1-201ENST00000509378 2057 ntBASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.44□□□□□ -0.26
CHMP1AQ9HD42 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 RNA5SP410-201ENST00000516285 106 ntBASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 AC105233.2-201ENST00000523697 349 ntBASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 AF228730.5-201ENST00000530288 346 ntBASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SPTSSB-204ENST00000617024 1292 ntBASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 AC005912.2-201ENST00000619492 2400 ntBASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.43□□□□□ -0.26
CHMP1AQ9HD42 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms