Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 AC006538.1-201ENST00000567905 1585 ntBASIC13.05□□□□□ -0.32
ABCA1O95477 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.05□□□□□ -0.32
ABCA1O95477 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
ABCA1O95477 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.05□□□□□ -0.32
ABCA1O95477 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.05□□□□□ -0.32
ABCA1O95477 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.05□□□□□ -0.32
ABCA1O95477 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
ABCA1O95477 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA1O95477 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA1O95477 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA1O95477 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA1O95477 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA1O95477 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA1O95477 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA1O95477 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 FAM86HP-204ENST00000513466 959 ntBASIC13.04□□□□□ -0.32
ABCA1O95477 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA1O95477 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA1O95477 AL049840.4-201ENST00000602422 811 ntBASIC13.04□□□□□ -0.32
ABCA1O95477 AC005252.2-201ENST00000624630 1141 ntBASIC13.04□□□□□ -0.32
ABCA1O95477 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 REXO1L8P-201ENST00000604378 1897 ntBASIC13.04□□□□□ -0.32
ABCA1O95477 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 MSTO2P-201ENST00000314835 1709 ntBASIC13.04□□□□□ -0.32
ABCA1O95477 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA1O95477 AL391005.1-201ENST00000623953 2435 ntBASIC13.04□□□□□ -0.32
ABCA1O95477 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
ABCA1O95477 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA1O95477 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.04□□□□□ -0.32
ABCA1O95477 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.04□□□□□ -0.32
ABCA1O95477 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.04□□□□□ -0.32
ABCA1O95477 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA1O95477 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.03□□□□□ -0.32
ABCA1O95477 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 AC046158.3-201ENST00000624947 2558 ntBASIC13.03□□□□□ -0.32
ABCA1O95477 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
ABCA1O95477 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms