Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
PTPN4P29074 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 TREML5P-201ENST00000421694 576 ntBASIC15.66■□□□□ 0.1
PTPN4P29074 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.66■□□□□ 0.1
PTPN4P29074 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.66■□□□□ 0.1
PTPN4P29074 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 IGHV3-42-201ENST00000520410 361 ntBASIC15.66■□□□□ 0.1
PTPN4P29074 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.66■□□□□ 0.1
PTPN4P29074 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.66■□□□□ 0.1
PTPN4P29074 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.66■□□□□ 0.1
PTPN4P29074 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 AC148477.4-201ENST00000613430 1793 ntBASIC15.66■□□□□ 0.1
PTPN4P29074 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.66■□□□□ 0.1
PTPN4P29074 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PTPN4P29074 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.65■□□□□ 0.1
PTPN4P29074 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PTPN4P29074 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.65■□□□□ 0.1
PTPN4P29074 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
PTPN4P29074 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.65■□□□□ 0.1
PTPN4P29074 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.65■□□□□ 0.1
PTPN4P29074 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.65■□□□□ 0.1
PTPN4P29074 AC069120.2-201ENST00000524091 540 ntBASIC15.65■□□□□ 0.1
PTPN4P29074 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.65■□□□□ 0.1
PTPN4P29074 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.65■□□□□ 0.1
PTPN4P29074 AL158211.3-201ENST00000607385 239 ntBASIC15.65■□□□□ 0.1
PTPN4P29074 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.65■□□□□ 0.1
PTPN4P29074 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.65■□□□□ 0.1
PTPN4P29074 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PTPN4P29074 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 MIR600HG-201ENST00000449175 5984 ntBASIC15.65■□□□□ 0.1
PTPN4P29074 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PTPN4P29074 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms