Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.23□□□□□ -0.13
MSX1P28360 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.23□□□□□ -0.13
MSX1P28360 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.23□□□□□ -0.13
MSX1P28360 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.23□□□□□ -0.13
MSX1P28360 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.23□□□□□ -0.13
MSX1P28360 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.23□□□□□ -0.13
MSX1P28360 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 AL158212.4-201ENST00000624062 1286 ntBASIC14.23□□□□□ -0.13
MSX1P28360 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.23□□□□□ -0.13
MSX1P28360 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MSX1P28360 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MSX1P28360 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX1P28360 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 AC084364.1-201ENST00000551967 1556 ntBASIC14.22□□□□□ -0.13
MSX1P28360 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
MSX1P28360 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.13
MSX1P28360 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
MSX1P28360 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
MSX1P28360 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
MSX1P28360 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 MIR658-201ENST00000385210 100 ntBASIC14.22□□□□□ -0.13
MSX1P28360 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
MSX1P28360 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 TTTY23B-201ENST00000442790 549 ntBASIC14.22□□□□□ -0.13
MSX1P28360 MYCLP2-201ENST00000449268 967 ntBASIC14.22□□□□□ -0.13
MSX1P28360 AL589987.1-201ENST00000453380 819 ntBASIC14.22□□□□□ -0.13
MSX1P28360 RN7SL837P-201ENST00000463010 287 ntBASIC14.22□□□□□ -0.13
MSX1P28360 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX1P28360 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.22□□□□□ -0.13
MSX1P28360 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.22□□□□□ -0.13
MSX1P28360 AL391069.4-201ENST00000609583 481 ntBASIC14.22□□□□□ -0.13
MSX1P28360 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.22□□□□□ -0.13
MSX1P28360 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
MSX1P28360 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX1P28360 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.22□□□□□ -0.13
MSX1P28360 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
MSX1P28360 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MSX1P28360 AL136379.1-201ENST00000623471 2642 ntBASIC14.22□□□□□ -0.13
MSX1P28360 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
MSX1P28360 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX1P28360 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 398.3 ms