Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MTHFD1-208ENST00000554739 688 ntTSL 316.65■□□□□ 0.263e-7■□□□□ 10.1
YBX3P16989 MTHFD1-209ENST00000554768 563 ntTSL 416.65■□□□□ 0.263e-7■□□□□ 10.1
YBX3P16989 MTHFD1-211ENST00000555709 803 ntTSL 216.18■□□□□ 0.183e-7■□□□□ 10.1
YBX3P16989 CENPV-204ENST00000482983 473 ntTSL 311.86□□□□□ -0.512e-6■□□□□ 10.1
YBX3P16989 MTHFD1-216ENST00000557539 509 ntTSL 46.69□□□□□ -1.343e-7■□□□□ 10.1
YBX3P16989 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC26.86■■□□□ 1.896e-10■□□□□ 10.1
YBX3P16989 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.556e-10■□□□□ 10.1
YBX3P16989 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.56e-10■□□□□ 10.1
YBX3P16989 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.56e-10■□□□□ 10.1
YBX3P16989 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.58■■□□□ 1.053e-6■□□□□ 10.1
YBX3P16989 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.58■■□□□ 1.053e-6■□□□□ 10.1
YBX3P16989 DNAJC19-202ENST00000469657 1239 ntTSL 220.15■□□□□ 0.823e-6■□□□□ 10.1
YBX3P16989 DNAJC19-204ENST00000478723 935 ntTSL 220.03■□□□□ 0.83e-6■□□□□ 10.1
YBX3P16989 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.623e-6■□□□□ 10.1
YBX3P16989 DNAJC19-205ENST00000479269 610 ntTSL 3 BASIC12.14□□□□□ -0.473e-6■□□□□ 10.1
YBX3P16989 PHF3-212ENST00000515594 3074 ntTSL 213.07□□□□□ -0.322e-6■□□□□ 10.1
YBX3P16989 RPS6-202ENST00000380381 892 ntTSL 2 BASIC12.15□□□□□ -0.461e-27■□□□□ 10.1
YBX3P16989 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.511e-6■□□□□ 10.1
YBX3P16989 CABIN1-203ENST00000398319 7480 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.511e-6■□□□□ 10.1
YBX3P16989 CABIN1-204ENST00000405822 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.571e-6■□□□□ 10.1
YBX3P16989 CABIN1-214ENST00000617531 7072 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.631e-6■□□□□ 10.1
YBX3P16989 PHF3-201ENST00000262043 8233 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.742e-6■□□□□ 10.1
YBX3P16989 PHF3-208ENST00000506783 3700 ntTSL 1 (best)10□□□□□ -0.812e-6■□□□□ 10.1
YBX3P16989 PHF3-206ENST00000503248 529 ntTSL 36.23□□□□□ -1.412e-6■□□□□ 10.1
YBX3P16989 PHF3-210ENST00000509876 7124 ntTSL 1 (best)5.63□□□□□ -1.512e-6■□□□□ 10.1
YBX3P16989 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.912e-6■□□□□ 10.1
YBX3P16989 USP22-204ENST00000476111 573 ntTSL 324.93■■□□□ 1.582e-6■□□□□ 10.1
YBX3P16989 GRK2-203ENST00000524899 751 ntTSL 320.69■□□□□ 0.94e-8■□□□□ 10.1
YBX3P16989 GRK2-212ENST00000532611 410 ntTSL 515.94■□□□□ 0.144e-8■□□□□ 10.1
YBX3P16989 USP22-211ENST00000584538 554 ntTSL 415.14■□□□□ 0.012e-6■□□□□ 10.1
YBX3P16989 USP22-208ENST00000578446 605 ntTSL 313.13□□□□□ -0.312e-6■□□□□ 10.1
YBX3P16989 PLCG1-216ENST00000608885 865 ntTSL 511.14□□□□□ -0.637e-7■□□□□ 10.1
YBX3P16989 PSMD3-205ENST00000580980 580 ntTSL 216.12■□□□□ 0.176e-8■□□□□ 10.1
YBX3P16989 TOMM20-203ENST00000473132 365 ntTSL 28.08□□□□□ -1.127e-20■□□□□ 10.1
YBX3P16989 TOMM20-202ENST00000467767 377 ntTSL 34.89□□□□□ -1.637e-20■□□□□ 10.1
YBX3P16989 C19orf48-206ENST00000596554 727 ntTSL 318.07■□□□□ 0.487e-8■□□□□ 10.1
YBX3P16989 C19orf48-211ENST00000599004 866 ntTSL 517.1■□□□□ 0.337e-8■□□□□ 10.1
YBX3P16989 C19orf48-204ENST00000595794 941 ntTSL 1 (best)15.37■□□□□ 0.057e-8■□□□□ 10.1
YBX3P16989 MAPKAPK3-202ENST00000430409 1160 ntTSL 532.11■■■□□ 2.739e-10■□□□□ 10.1
YBX3P16989 TOP1MT-216ENST00000522121 874 ntTSL 324.85■■□□□ 1.577e-8■□□□□ 10.1
YBX3P16989 ANXA7-205ENST00000492380 843 ntTSL 522.13■■□□□ 1.137e-8■□□□□ 10.1
YBX3P16989 SPC24-207ENST00000592967 833 ntTSL 321.05■□□□□ 0.967e-8■□□□□ 10.1
YBX3P16989 SPC24-203ENST00000585567 633 ntTSL 320.63■□□□□ 0.897e-8■□□□□ 10.1
YBX3P16989 SPC24-205ENST00000591396 832 ntTSL 519■□□□□ 0.637e-8■□□□□ 10.1
YBX3P16989 TARS2-210ENST00000467982 1855 ntTSL 518.88■□□□□ 0.614e-10■□□□□ 10.1
YBX3P16989 TOP1MT-209ENST00000519591 1007 ntTSL 518.86■□□□□ 0.617e-8■□□□□ 10.1
YBX3P16989 VDAC2-209ENST00000470745 661 ntTSL 318.6■□□□□ 0.572e-11■□□□□ 10.1
YBX3P16989 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.517e-8■□□□□ 10.1
YBX3P16989 TOP1MT-217ENST00000523417 698 ntTSL 317.22■□□□□ 0.357e-8■□□□□ 10.1
YBX3P16989 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.02■□□□□ 0.314e-10■□□□□ 10.1
YBX3P16989 TFAM-201ENST00000373895 973 ntTSL 2 BASIC16.74■□□□□ 0.272e-18■□□□□ 10.1
YBX3P16989 TARS2-201ENST00000369051 2106 ntTSL 516.48■□□□□ 0.234e-10■□□□□ 10.1
YBX3P16989 TARS2-211ENST00000479372 850 ntTSL 216.43■□□□□ 0.224e-10■□□□□ 10.1
YBX3P16989 MAPKAPK3-204ENST00000451680 873 ntTSL 216.23■□□□□ 0.199e-10■□□□□ 10.1
YBX3P16989 PDCD11-204ENST00000478543 717 ntTSL 215.57■□□□□ 0.087e-8■□□□□ 10.1
YBX3P16989 TARS2-202ENST00000369053 628 ntTSL 215.56■□□□□ 0.084e-10■□□□□ 10.1
YBX3P16989 TARS2-214ENST00000606933 2162 ntTSL 1 (best) BASIC15.42■□□□□ 0.064e-10■□□□□ 10.1
YBX3P16989 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC15.31■□□□□ 0.044e-10■□□□□ 10.1
YBX3P16989 ANXA7-201ENST00000372919 2174 ntTSL 1 (best)14.85□□□□□ -0.037e-8■□□□□ 10.1
YBX3P16989 CCNY-210ENST00000497692 478 ntTSL 214.47□□□□□ -0.097e-8■□□□□ 10.1
YBX3P16989 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.122e-18■□□□□ 10.1
YBX3P16989 TOP1MT-214ENST00000522041 906 ntTSL 313.88□□□□□ -0.197e-8■□□□□ 10.1
YBX3P16989 NSD2-210ENST00000482415 3602 ntTSL 1 (best)13.27□□□□□ -0.289e-10■□□□□ 10.1
YBX3P16989 CCNY-205ENST00000465416 432 ntTSL 512.92□□□□□ -0.347e-8■□□□□ 10.1
YBX3P16989 UBR4-207ENST00000425413 2954 ntTSL 212.27□□□□□ -0.442e-11■□□□□ 10.1
YBX3P16989 TARS2-204ENST00000369064 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.464e-10■□□□□ 10.1
YBX3P16989 ANXA7-202ENST00000372921 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.537e-8■□□□□ 10.1
YBX3P16989 CCNY-208ENST00000492478 809 ntTSL 510.96□□□□□ -0.657e-8■□□□□ 10.1
YBX3P16989 ANKRD28-214ENST00000498713 1091 ntTSL 29.5□□□□□ -0.894e-10■□□□□ 10.1
YBX3P16989 UBR4-209ENST00000465036 392 ntTSL 28.85□□□□□ -0.992e-11■□□□□ 10.1
YBX3P16989 TARS2-209ENST00000466989 427 ntTSL 58.38□□□□□ -1.074e-10■□□□□ 10.1
YBX3P16989 CHD8-207ENST00000554384 735 ntTSL 37.26□□□□□ -1.257e-8■□□□□ 10.1
YBX3P16989 BLMH-206ENST00000578795 2079 nt8.96□□□□□ -0.985e-10■□□□□ 10.1
YBX3P16989 NEAT1-202ENST00000501122 22743 ntBASIC4.49□□□□□ -1.698e-13■□□□□ 10.1
YBX3P16989 RPL18-202ENST00000546623 541 ntTSL 520.95■□□□□ 0.945e-49■□□□□ 10.1
YBX3P16989 GSE1-216ENST00000637419 2683 ntTSL 520.17■□□□□ 0.822e-19■□□□□ 10.1
YBX3P16989 WDR1-209ENST00000505851 715 ntTSL 229.02■■■□□ 2.244e-9■□□□□ 10.1
YBX3P16989 WDR1-211ENST00000508079 812 ntTSL 316.42■□□□□ 0.224e-9■□□□□ 10.1
YBX3P16989 SOD2-201ENST00000337404 991 ntTSL 2 BASIC22.41■■□□□ 1.187e-7■□□□□ 10.1
YBX3P16989 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.21■□□□□ 0.997e-7■□□□□ 10.1
YBX3P16989 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.79■□□□□ 0.67e-7■□□□□ 10.1
YBX3P16989 SOD2-209ENST00000535561 551 ntTSL 318.18■□□□□ 0.57e-7■□□□□ 10.1
YBX3P16989 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.88■□□□□ 0.457e-7■□□□□ 10.1
YBX3P16989 SOD2-204ENST00000401980 523 ntTSL 417.34■□□□□ 0.377e-7■□□□□ 10.1
YBX3P16989 SOD2-214ENST00000545162 571 ntTSL 315.92■□□□□ 0.147e-7■□□□□ 10.1
YBX3P16989 SOD2-203ENST00000367055 990 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.257e-7■□□□□ 10.1
YBX3P16989 SOD2-210ENST00000537657 507 ntTSL 213.44□□□□□ -0.267e-7■□□□□ 10.1
YBX3P16989 SOD2-216ENST00000546260 4302 ntTSL 510.13□□□□□ -0.797e-7■□□□□ 10.1
YBX3P16989 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.217e-7■□□□□ 10.1
YBX3P16989 TUBB6-212ENST00000591463 485 ntTSL 219.31■□□□□ 0.685e-7■□□□□ 10.1
YBX3P16989 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.41e-6■□□□□ 10.1
YBX3P16989 MRPS35-202ENST00000536569 557 ntTSL 417.74■□□□□ 0.431e-6■□□□□ 10.1
YBX3P16989 MRPS35-204ENST00000542199 750 ntTSL 310.6□□□□□ -0.711e-6■□□□□ 10.1
YBX3P16989 MRPS35-205ENST00000542791 466 ntTSL 310.58□□□□□ -0.721e-6■□□□□ 10.1
YBX3P16989 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.983e-8■□□□□ 10.1
YBX3P16989 TAF15-204ENST00000603427 547 ntTSL 421.18■□□□□ 0.983e-8■□□□□ 10.1
YBX3P16989 TAF15-214ENST00000605649 776 ntTSL 520.57■□□□□ 0.883e-8■□□□□ 10.1
YBX3P16989 TAF15-203ENST00000603393 1214 ntTSL 1 (best)20.57■□□□□ 0.883e-8■□□□□ 10.1
YBX3P16989 TAF15-208ENST00000604360 409 ntTSL 320.57■□□□□ 0.883e-8■□□□□ 10.1
YBX3P16989 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.863e-8■□□□□ 10.1
Retrieved 100 of 29,075 protein–RNA pairs in 247.3 ms