RNA–Protein interactions for RNA: ENST00000509876.5

PHF3-210, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 7,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-210ENST00000509876 NISCHQ9Y2I1 1504 aa10.05□□□□□ -0.8
PHF3-210ENST00000509876 DCAF8L2P0C7V8 631 aa9.57□□□□□ -0.88
PHF3-210ENST00000509876 SHROOM4Q9ULL8 1493 aa8.85□□□□□ -0.99
PHF3-210ENST00000509876 ABCC9O60706 1549 aa8.78□□□□□ -1
PHF3-210ENST00000509876 SUPT5HO00267 1087 aaKnown RBP8.72□□□□□ -1.01
PHF3-210ENST00000509876 CCDC180Q9P1Z9 1646 aa8.66□□□□□ -1.02
PHF3-210ENST00000509876 PABPN1Q86U42 306 aaKnown RBP eCLIP8.47□□□□□ -1.05
PHF3-210ENST00000509876 FAM9AQ8IZU1 332 aaPredicted RBP8.42□□□□□ -1.06
PHF3-210ENST00000509876 RB1CC1Q8TDY2 1594 aa8.4□□□□□ -1.06
PHF3-210ENST00000509876 ZCCHC6Q5VYS8 1495 aaKnown RBP8.33□□□□□ -1.08
PHF3-210ENST00000509876 NACADO15069 1562 aa8.32□□□□□ -1.08
PHF3-210ENST00000509876 SCRIBQ14160 1630 aa8.3□□□□□ -1.08
PHF3-210ENST00000509876 EHMT2Q96KQ7 1210 aa8.23□□□□□ -1.09
PHF3-210ENST00000509876 TRIM41Q8WV44 630 aa8.21□□□□□ -1.1
PHF3-210ENST00000509876 APLP2Q06481 763 aa8.2□□□□□ -1.1
PHF3-210ENST00000509876 DCAF1Q9Y4B6 1507 aa8.12□□□□□ -1.11
PHF3-210ENST00000509876 RANGAP1P46060 587 aaPredicted RBP8.08□□□□□ -1.12
PHF3-210ENST00000509876 UBTFP17480 764 aaKnown RBP8.06□□□□□ -1.12
PHF3-210ENST00000509876 ATP1B4Q9UN42 357 aaPredicted RBP8.06□□□□□ -1.12
PHF3-210ENST00000509876 MYO15BQ96JP2 1530 aa8.03□□□□□ -1.12
PHF3-210ENST00000509876 TTBK1Q5TCY1 1321 aaPredicted RBP7.96□□□□□ -1.13
PHF3-210ENST00000509876 BAZ1BQ9UIG0 1483 aaKnown RBP7.96□□□□□ -1.14
PHF3-210ENST00000509876 FBLN2P98095 1184 aa7.95□□□□□ -1.14
PHF3-210ENST00000509876 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.94□□□□□ -1.14
PHF3-210ENST00000509876 HNRNPUL2Q1KMD3 747 aaKnown RBP7.94□□□□□ -1.14
PHF3-210ENST00000509876 BAZ1AQ9NRL2 1556 aaPredicted RBP7.93□□□□□ -1.14
PHF3-210ENST00000509876 ERCC6Q03468 1493 aa7.92□□□□□ -1.14
PHF3-210ENST00000509876 MYT1LQ9UL68 1186 aa7.87□□□□□ -1.15
PHF3-210ENST00000509876 SMARCA2P51531 1590 aa7.87□□□□□ -1.15
PHF3-210ENST00000509876 CECR2Q9BXF3 1484 aa7.84□□□□□ -1.15
PHF3-210ENST00000509876 RSF1Q96T23 1441 aaPredicted RBP7.83□□□□□ -1.16
PHF3-210ENST00000509876 CHIC1Q5VXU3 224 aa7.81□□□□□ -1.16
PHF3-210ENST00000509876 PDS5BQ9NTI5 1447 aa7.77□□□□□ -1.17
PHF3-210ENST00000509876 CHMP7Q8WUX9 453 aaPredicted RBP7.76□□□□□ -1.17
PHF3-210ENST00000509876 NPM1P06748 294 aaKnown RBP eCLIP7.75□□□□□ -1.17
PHF3-210ENST00000509876 MROH2BQ7Z745 1585 aa7.72□□□□□ -1.17
PHF3-210ENST00000509876 SMARCA4P51532 1647 aa7.72□□□□□ -1.17
PHF3-210ENST00000509876 CSRNP3Q8WYN3 585 aa7.7□□□□□ -1.18
PHF3-210ENST00000509876 ATAD2BQ9ULI0 1458 aa7.7□□□□□ -1.18
PHF3-210ENST00000509876 EIF4G1Q04637 1599 aaKnown RBP7.69□□□□□ -1.18
PHF3-210ENST00000509876 TOP2AP11388 1531 aaKnown RBP7.69□□□□□ -1.18
PHF3-210ENST00000509876 CDK11AQ9UQ88 783 aaPredicted RBP7.67□□□□□ -1.18
PHF3-210ENST00000509876 WRNQ14191 1432 aaPredicted RBP eCLIP7.67□□□□□ -1.18
PHF3-210ENST00000509876 CADPSQ9ULU8 1353 aa7.65□□□□□ -1.18
PHF3-210ENST00000509876 P3H3Q8IVL6 736 aa7.65□□□□□ -1.19
PHF3-210ENST00000509876 LOC105371045A0A1W2PR82 267 aa7.64□□□□□ -1.19
PHF3-210ENST00000509876 CCDC88BA6NC98 1476 aa7.64□□□□□ -1.19
PHF3-210ENST00000509876 CEP164Q9UPV0 1460 aa7.64□□□□□ -1.19
PHF3-210ENST00000509876 WIZO95785 1651 aa7.64□□□□□ -1.19
PHF3-210ENST00000509876 ITGAEP38570 1179 aa7.63□□□□□ -1.19
PHF3-210ENST00000509876 CC2D2AQ9P2K1 1620 aa7.63□□□□□ -1.19
PHF3-210ENST00000509876 KIF27Q86VH2 1401 aa7.63□□□□□ -1.19
PHF3-210ENST00000509876 PPARGC1BQ86YN6 1023 aaKnown RBP7.62□□□□□ -1.19
PHF3-210ENST00000509876 NCAPD3P42695 1498 aa7.61□□□□□ -1.19
PHF3-210ENST00000509876 ARID3CA6NKF2 412 aa7.61□□□□□ -1.19
PHF3-210ENST00000509876 PCGF6Q9BYE7 350 aa7.61□□□□□ -1.19
PHF3-210ENST00000509876 FAM50AQ14320 339 aaKnown RBP7.6□□□□□ -1.19
PHF3-210ENST00000509876 EEA1Q15075 1411 aa7.59□□□□□ -1.19
PHF3-210ENST00000509876 CCER1Q8TC90 406 aaPredicted RBP7.59□□□□□ -1.2
PHF3-210ENST00000509876 ABCC8Q09428 1581 aa7.58□□□□□ -1.2
PHF3-210ENST00000509876 FANCD2Q9BXW9 1451 aa7.57□□□□□ -1.2
PHF3-210ENST00000509876 ESF1Q9H501 851 aaKnown RBP7.57□□□□□ -1.2
PHF3-210ENST00000509876 SOGA1O94964 1423 aa7.56□□□□□ -1.2
PHF3-210ENST00000509876 CUX2O14529 1486 aa7.55□□□□□ -1.2
PHF3-210ENST00000509876 BICRAQ9NZM4 1560 aa7.55□□□□□ -1.2
PHF3-210ENST00000509876 HMGXB3Q12766 1538 aa7.54□□□□□ -1.2
PHF3-210ENST00000509876 ZNF777Q9ULD5 760 aaPredicted RBP7.54□□□□□ -1.2
PHF3-210ENST00000509876 ZEB1P37275 1124 aaPredicted RBP7.52□□□□□ -1.21
PHF3-210ENST00000509876 TRIM52Q96A61 297 aa7.52□□□□□ -1.21
PHF3-210ENST00000509876 GOLGA3Q08378 1498 aa7.51□□□□□ -1.21
PHF3-210ENST00000509876 TRIM26Q12899 539 aaPredicted RBP7.51□□□□□ -1.21
PHF3-210ENST00000509876 UNC13AQ9UPW8 1703 aa7.5□□□□□ -1.21
PHF3-210ENST00000509876 CARMIL1Q5VZK9 1371 aa7.49□□□□□ -1.21
PHF3-210ENST00000509876 TRHP20396 242 aaPredicted RBP7.49□□□□□ -1.21
PHF3-210ENST00000509876 PLEKHD1A6NEE1 506 aa7.48□□□□□ -1.21
PHF3-210ENST00000509876 CARMIL2Q6F5E8 1435 aa7.48□□□□□ -1.21
PHF3-210ENST00000509876 TDRD9Q8NDG6 1382 aaKnown RBP7.48□□□□□ -1.21
PHF3-210ENST00000509876 MRC2Q9UBG0 1479 aa7.48□□□□□ -1.21
PHF3-210ENST00000509876 KCNH8Q96L42 1107 aa7.47□□□□□ -1.21
PHF3-210ENST00000509876 OSCARQ8IYS5 282 aa7.46□□□□□ -1.22
PHF3-210ENST00000509876 MTUS2Q5JR59 1369 aa7.45□□□□□ -1.22
PHF3-210ENST00000509876 CLIP1P30622 1438 aa7.45□□□□□ -1.22
PHF3-210ENST00000509876 DNAJC5BQ9UF47 199 aa7.45□□□□□ -1.22
PHF3-210ENST00000509876 BCANQ96GW7 911 aa7.45□□□□□ -1.22
PHF3-210ENST00000509876 LAMC3Q9Y6N6 1575 aa7.43□□□□□ -1.22
PHF3-210ENST00000509876 CFTRP13569 1480 aa7.42□□□□□ -1.22
PHF3-210ENST00000509876 PLPPR3Q6T4P5 718 aa7.42□□□□□ -1.22
PHF3-210ENST00000509876 TSPY4P0CV99 314 aa7.41□□□□□ -1.22
PHF3-210ENST00000509876 TSPY10P0CW01 314 aa7.41□□□□□ -1.22
PHF3-210ENST00000509876 NESP48681 1621 aa7.41□□□□□ -1.22
PHF3-210ENST00000509876 STAG3Q9UJ98 1225 aa7.41□□□□□ -1.22
PHF3-210ENST00000509876 IFT140Q96RY7 1462 aa7.41□□□□□ -1.22
PHF3-210ENST00000509876 FGD5Q6ZNL6 1462 aa7.4□□□□□ -1.22
PHF3-210ENST00000509876 ARID4BQ4LE39 1312 aaPredicted RBP7.39□□□□□ -1.23
PHF3-210ENST00000509876 GAPVD1Q14C86 1478 aa7.39□□□□□ -1.23
PHF3-210ENST00000509876 FHAD1B1AJZ9 1412 aa7.38□□□□□ -1.23
PHF3-210ENST00000509876 RAPGEF2Q9Y4G8 1499 aa7.38□□□□□ -1.23
PHF3-210ENST00000509876 TNIKQ9UKE5 1360 aa7.38□□□□□ -1.23
PHF3-210ENST00000509876 POLR3GLQ9BT43 218 aa7.37□□□□□ -1.23
PHF3-210ENST00000509876 SLC4A1APQ9BWU0 796 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms