RNA–Protein interactions for RNA: ENST00000506783.5

PHF3-208, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 3,700 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-208ENST00000506783 NISCHQ9Y2I1 1504 aa18.09■□□□□ 0.49
PHF3-208ENST00000506783 DCAF8L2P0C7V8 631 aa17.1■□□□□ 0.33
PHF3-208ENST00000506783 SHROOM4Q9ULL8 1493 aa17.06■□□□□ 0.32
PHF3-208ENST00000506783 SUPT5HO00267 1087 aaKnown RBP16.95■□□□□ 0.3
PHF3-208ENST00000506783 EHMT2Q96KQ7 1210 aa16.39■□□□□ 0.21
PHF3-208ENST00000506783 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
PHF3-208ENST00000506783 FAM9AQ8IZU1 332 aaPredicted RBP15.93■□□□□ 0.14
PHF3-208ENST00000506783 PPARGC1BQ86YN6 1023 aaKnown RBP15.9■□□□□ 0.14
PHF3-208ENST00000506783 LOC105371045A0A1W2PR82 267 aa15.88■□□□□ 0.13
PHF3-208ENST00000506783 TTBK1Q5TCY1 1321 aaPredicted RBP15.76■□□□□ 0.11
PHF3-208ENST00000506783 CHIC1Q5VXU3 224 aa15.72■□□□□ 0.11
PHF3-208ENST00000506783 ABCC9O60706 1549 aa15.67■□□□□ 0.1
PHF3-208ENST00000506783 HRCP23327 699 aa15.51■□□□□ 0.07
PHF3-208ENST00000506783 MYO15BQ96JP2 1530 aa15.42■□□□□ 0.06
PHF3-208ENST00000506783 TRIM41Q8WV44 630 aa15.35■□□□□ 0.05
PHF3-208ENST00000506783 RANGAP1P46060 587 aaPredicted RBP15.3■□□□□ 0.04
PHF3-208ENST00000506783 PABPN1Q86U42 306 aaKnown RBP eCLIP15.3■□□□□ 0.04
PHF3-208ENST00000506783 TRIM26Q12899 539 aaPredicted RBP15.1■□□□□ 0.01
PHF3-208ENST00000506783 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.09■□□□□ 0.01
PHF3-208ENST00000506783 CCDC180Q9P1Z9 1646 aa15.07■□□□□ 0
PHF3-208ENST00000506783 CCER1Q8TC90 406 aaPredicted RBP15.03■□□□□ -0
PHF3-208ENST00000506783 ZCCHC6Q5VYS8 1495 aaKnown RBP15□□□□□ -0.01
PHF3-208ENST00000506783 YTHDC1Q96MU7 727 aaKnown RBP14.98□□□□□ -0.01
PHF3-208ENST00000506783 UBTFP17480 764 aaKnown RBP14.89□□□□□ -0.03
PHF3-208ENST00000506783 SCRIBQ14160 1630 aa14.85□□□□□ -0.03
PHF3-208ENST00000506783 HNRNPUL2Q1KMD3 747 aaKnown RBP14.78□□□□□ -0.04
PHF3-208ENST00000506783 ZEB1P37275 1124 aaPredicted RBP14.65□□□□□ -0.06
PHF3-208ENST00000506783 ITGAEP38570 1179 aa14.64□□□□□ -0.07
PHF3-208ENST00000506783 SCAF1Q9H7N4 1312 aaKnown RBP14.63□□□□□ -0.07
PHF3-208ENST00000506783 DIEXFQ68CQ4 756 aaKnown RBP14.58□□□□□ -0.08
PHF3-208ENST00000506783 APLP2Q06481 763 aa14.56□□□□□ -0.08
PHF3-208ENST00000506783 ATP1B4Q9UN42 357 aaPredicted RBP14.55□□□□□ -0.08
PHF3-208ENST00000506783 GTF3C3Q9Y5Q9 886 aa14.55□□□□□ -0.08
PHF3-208ENST00000506783 NEUROD1Q13562 356 aa14.52□□□□□ -0.08
PHF3-208ENST00000506783 RB1CC1Q8TDY2 1594 aa14.51□□□□□ -0.09
PHF3-208ENST00000506783 RSF1Q96T23 1441 aaPredicted RBP14.51□□□□□ -0.09
PHF3-208ENST00000506783 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
PHF3-208ENST00000506783 NACADO15069 1562 aa14.46□□□□□ -0.09
PHF3-208ENST00000506783 CECR2Q9BXF3 1484 aa14.45□□□□□ -0.1
PHF3-208ENST00000506783 CENPBP07199 599 aaPredicted RBP14.42□□□□□ -0.1
PHF3-208ENST00000506783 ACIN1Q9UKV3 1341 aaKnown RBP14.33□□□□□ -0.11
PHF3-208ENST00000506783 CNGB1Q14028 1251 aaPredicted RBP14.3□□□□□ -0.12
PHF3-208ENST00000506783 CSRNP3Q8WYN3 585 aa14.28□□□□□ -0.12
PHF3-208ENST00000506783 MIER1Q8N108 512 aa14.25□□□□□ -0.13
PHF3-208ENST00000506783 BCANQ96GW7 911 aa14.24□□□□□ -0.13
PHF3-208ENST00000506783 P3H3Q8IVL6 736 aa14.22□□□□□ -0.13
PHF3-208ENST00000506783 HIRIP3Q9BW71 556 aaPredicted RBP14.2□□□□□ -0.14
PHF3-208ENST00000506783 ZNF316A6NFI3 1004 aaPredicted RBP14.19□□□□□ -0.14
PHF3-208ENST00000506783 SOGA1O94964 1423 aa14.19□□□□□ -0.14
PHF3-208ENST00000506783 MROH2BQ7Z745 1585 aa14.18□□□□□ -0.14
PHF3-208ENST00000506783 ABCC8Q09428 1581 aa14.16□□□□□ -0.14
PHF3-208ENST00000506783 CCDC88BA6NC98 1476 aa14.11□□□□□ -0.15
PHF3-208ENST00000506783 ARID3CA6NKF2 412 aa14.09□□□□□ -0.15
PHF3-208ENST00000506783 RUSC2Q8N2Y8 1516 aa14.09□□□□□ -0.15
PHF3-208ENST00000506783 FAM50AQ14320 339 aaKnown RBP14.07□□□□□ -0.16
PHF3-208ENST00000506783 CEP162Q5TB80 1403 aa14.07□□□□□ -0.16
PHF3-208ENST00000506783 WIZO95785 1651 aa14.07□□□□□ -0.16
PHF3-208ENST00000506783 PELP1Q8IZL8 1130 aaKnown RBP14.06□□□□□ -0.16
PHF3-208ENST00000506783 SENP3-EIF4A1A0A087X0R7 540 aa14.01□□□□□ -0.17
PHF3-208ENST00000506783 BAZ1AQ9NRL2 1556 aaPredicted RBP13.98□□□□□ -0.17
PHF3-208ENST00000506783 FBLN2P98095 1184 aa13.98□□□□□ -0.17
PHF3-208ENST00000506783 BAZ1BQ9UIG0 1483 aaKnown RBP13.97□□□□□ -0.17
PHF3-208ENST00000506783 POLR3GLQ9BT43 218 aa13.95□□□□□ -0.18
PHF3-208ENST00000506783 DNAJC5BQ9UF47 199 aa13.95□□□□□ -0.18
PHF3-208ENST00000506783 KCNH8Q96L42 1107 aa13.94□□□□□ -0.18
PHF3-208ENST00000506783 DDX10Q13206 875 aaKnown RBP13.93□□□□□ -0.18
PHF3-208ENST00000506783 KANK4Q5T7N3 995 aaPredicted RBP13.92□□□□□ -0.18
PHF3-208ENST00000506783 TRIM52Q96A61 297 aa13.9□□□□□ -0.18
PHF3-208ENST00000506783 CLIP1P30622 1438 aa13.86□□□□□ -0.19
PHF3-208ENST00000506783 SIN3AQ96ST3 1273 aa13.86□□□□□ -0.19
PHF3-208ENST00000506783 IRX6P78412 446 aaPredicted RBP13.85□□□□□ -0.19
PHF3-208ENST00000506783 ATAD2BQ9ULI0 1458 aa13.81□□□□□ -0.2
PHF3-208ENST00000506783 WRNQ14191 1432 aaPredicted RBP eCLIP13.8□□□□□ -0.2
PHF3-208ENST00000506783 TNIKQ9UKE5 1360 aa13.78□□□□□ -0.2
PHF3-208ENST00000506783 FKBP8Q14318 412 aa13.78□□□□□ -0.2
PHF3-208ENST00000506783 CHIC2Q9UKJ5 165 aa13.77□□□□□ -0.21
PHF3-208ENST00000506783 SMARCA4P51532 1647 aa13.77□□□□□ -0.21
PHF3-208ENST00000506783 BICRAQ9NZM4 1560 aa13.76□□□□□ -0.21
PHF3-208ENST00000506783 NEFLP07196 543 aa13.73□□□□□ -0.21
PHF3-208ENST00000506783 ZNF326Q5BKZ1 582 aaKnown RBP13.72□□□□□ -0.21
PHF3-208ENST00000506783 GOLGA3Q08378 1498 aa13.7□□□□□ -0.22
PHF3-208ENST00000506783 RAPGEF2Q9Y4G8 1499 aa13.68□□□□□ -0.22
PHF3-208ENST00000506783 EIF4G1Q04637 1599 aaKnown RBP13.67□□□□□ -0.22
PHF3-208ENST00000506783 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
PHF3-208ENST00000506783 SUPT16HQ9Y5B9 1047 aaKnown RBP13.66□□□□□ -0.22
PHF3-208ENST00000506783 UNC13AQ9UPW8 1703 aa13.64□□□□□ -0.23
PHF3-208ENST00000506783 TOP2AP11388 1531 aaKnown RBP13.62□□□□□ -0.23
PHF3-208ENST00000506783 RRP7BPQ9NSQ0 103 aa13.61□□□□□ -0.23
PHF3-208ENST00000506783 SALL2Q9Y467 1007 aaPredicted RBP13.59□□□□□ -0.23
PHF3-208ENST00000506783 ANP32CO43423 234 aa13.58□□□□□ -0.24
PHF3-208ENST00000506783 FOXD1Q16676 465 aa13.58□□□□□ -0.24
PHF3-208ENST00000506783 FAM9BQ8IZU0 186 aa13.58□□□□□ -0.24
PHF3-208ENST00000506783 HNRNPUQ00839 825 aaKnown RBP eCLIP13.57□□□□□ -0.24
PHF3-208ENST00000506783 CADPSQ9ULU8 1353 aa13.57□□□□□ -0.24
PHF3-208ENST00000506783 ERCC6Q03468 1493 aa13.57□□□□□ -0.24
PHF3-208ENST00000506783 ERICH6Q7L0X2 663 aa13.56□□□□□ -0.24
PHF3-208ENST00000506783 TDRD9Q8NDG6 1382 aaKnown RBP13.55□□□□□ -0.24
PHF3-208ENST00000506783 CEP164Q9UPV0 1460 aa13.54□□□□□ -0.24
PHF3-208ENST00000506783 NESP48681 1621 aa13.54□□□□□ -0.24
PHF3-208ENST00000506783 CHMP7Q8WUX9 453 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms