RNA–Protein interactions for RNA: ENST00000262043.7

PHF3-201, Transcript of PHD finger protein 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PHF3, Length 8,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-201ENST00000262043 DCAF8L2P0C7V8 631 aa17.73■□□□□ 0.43
PHF3-201ENST00000262043 SUPT5HO00267 1087 aaKnown RBP16.83■□□□□ 0.29
PHF3-201ENST00000262043 NISCHQ9Y2I1 1504 aa16.71■□□□□ 0.27
PHF3-201ENST00000262043 SHROOM4Q9ULL8 1493 aa16.59■□□□□ 0.25
PHF3-201ENST00000262043 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
PHF3-201ENST00000262043 PELP1Q8IZL8 1130 aaKnown RBP16.16■□□□□ 0.18
PHF3-201ENST00000262043 APLP2Q06481 763 aa16.07■□□□□ 0.16
PHF3-201ENST00000262043 TTBK1Q5TCY1 1321 aaPredicted RBP15.95■□□□□ 0.14
PHF3-201ENST00000262043 FAM9AQ8IZU1 332 aaPredicted RBP15.93■□□□□ 0.14
PHF3-201ENST00000262043 PCGF6Q9BYE7 350 aa15.83■□□□□ 0.12
PHF3-201ENST00000262043 RANGAP1P46060 587 aaPredicted RBP15.73■□□□□ 0.11
PHF3-201ENST00000262043 ATP1B4Q9UN42 357 aaPredicted RBP15.6■□□□□ 0.09
PHF3-201ENST00000262043 CCER1Q8TC90 406 aaPredicted RBP15.59■□□□□ 0.09
PHF3-201ENST00000262043 ERICH6Q7L0X2 663 aa15.58■□□□□ 0.08
PHF3-201ENST00000262043 TRIM41Q8WV44 630 aa15.56■□□□□ 0.08
PHF3-201ENST00000262043 CENPBP07199 599 aaPredicted RBP15.56■□□□□ 0.08
PHF3-201ENST00000262043 ZEB1P37275 1124 aaPredicted RBP15.5■□□□□ 0.07
PHF3-201ENST00000262043 UBTFP17480 764 aaKnown RBP15.45■□□□□ 0.06
PHF3-201ENST00000262043 YTHDC1Q96MU7 727 aaKnown RBP15.34■□□□□ 0.05
PHF3-201ENST00000262043 PPARGC1BQ86YN6 1023 aaKnown RBP15.29■□□□□ 0.04
PHF3-201ENST00000262043 NEFLP07196 543 aa15.28■□□□□ 0.04
PHF3-201ENST00000262043 TRIM26Q12899 539 aaPredicted RBP15.08■□□□□ 0
PHF3-201ENST00000262043 ITGAEP38570 1179 aa15.04■□□□□ -0
PHF3-201ENST00000262043 POLR3GLQ9BT43 218 aa15□□□□□ -0.01
PHF3-201ENST00000262043 MYT1LQ9UL68 1186 aa14.99□□□□□ -0.01
PHF3-201ENST00000262043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.96□□□□□ -0.01
PHF3-201ENST00000262043 HNRNPUL2Q1KMD3 747 aaKnown RBP14.96□□□□□ -0.01
PHF3-201ENST00000262043 MYT1Q01538 1121 aa14.94□□□□□ -0.02
PHF3-201ENST00000262043 LOC105371045A0A1W2PR82 267 aa14.92□□□□□ -0.02
PHF3-201ENST00000262043 DAXXQ9UER7 740 aaPredicted RBP14.92□□□□□ -0.02
PHF3-201ENST00000262043 HRCP23327 699 aa14.89□□□□□ -0.03
PHF3-201ENST00000262043 CNGB1Q14028 1251 aaPredicted RBP14.89□□□□□ -0.03
PHF3-201ENST00000262043 CHIC1Q5VXU3 224 aa14.82□□□□□ -0.04
PHF3-201ENST00000262043 SLC4A1APQ9BWU0 796 aaKnown RBP14.76□□□□□ -0.05
PHF3-201ENST00000262043 DIEXFQ68CQ4 756 aaKnown RBP14.64□□□□□ -0.07
PHF3-201ENST00000262043 FAM50AQ14320 339 aaKnown RBP14.63□□□□□ -0.07
PHF3-201ENST00000262043 CLSPNQ9HAW4 1339 aa14.58□□□□□ -0.07
PHF3-201ENST00000262043 ZNF316A6NFI3 1004 aaPredicted RBP14.58□□□□□ -0.08
PHF3-201ENST00000262043 NEUROD1Q13562 356 aa14.53□□□□□ -0.08
PHF3-201ENST00000262043 TRIM52Q96A61 297 aa14.53□□□□□ -0.08
PHF3-201ENST00000262043 RTL5Q5HYW3 569 aaPredicted RBP14.51□□□□□ -0.09
PHF3-201ENST00000262043 ABCC9O60706 1549 aa14.47□□□□□ -0.09
PHF3-201ENST00000262043 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.1
PHF3-201ENST00000262043 BCANQ96GW7 911 aa14.41□□□□□ -0.1
PHF3-201ENST00000262043 ZNF326Q5BKZ1 582 aaKnown RBP14.4□□□□□ -0.1
PHF3-201ENST00000262043 ANP32CO43423 234 aa14.37□□□□□ -0.11
PHF3-201ENST00000262043 GTF3C3Q9Y5Q9 886 aa14.34□□□□□ -0.11
PHF3-201ENST00000262043 FBLN2P98095 1184 aa14.31□□□□□ -0.12
PHF3-201ENST00000262043 CDK11AQ9UQ88 783 aaPredicted RBP14.29□□□□□ -0.12
PHF3-201ENST00000262043 SLC24A1O60721 1099 aa14.28□□□□□ -0.12
PHF3-201ENST00000262043 BCL11AQ9H165 835 aa14.28□□□□□ -0.12
PHF3-201ENST00000262043 ZBTB47Q9UFB7 747 aaPredicted RBP14.27□□□□□ -0.12
PHF3-201ENST00000262043 CANXP27824 592 aaKnown RBP14.23□□□□□ -0.13
PHF3-201ENST00000262043 P3H3Q8IVL6 736 aa14.21□□□□□ -0.13
PHF3-201ENST00000262043 ARID3CA6NKF2 412 aa14.21□□□□□ -0.14
PHF3-201ENST00000262043 SCRIBQ14160 1630 aa14.19□□□□□ -0.14
PHF3-201ENST00000262043 NEFMP07197 916 aa14.13□□□□□ -0.15
PHF3-201ENST00000262043 ZNF777Q9ULD5 760 aaPredicted RBP14.11□□□□□ -0.15
PHF3-201ENST00000262043 ANP32AP39687 249 aaKnown RBP14.06□□□□□ -0.16
PHF3-201ENST00000262043 NPM2Q86SE8 214 aaKnown RBP14.05□□□□□ -0.16
PHF3-201ENST00000262043 ACIN1Q9UKV3 1341 aaKnown RBP14.04□□□□□ -0.16
PHF3-201ENST00000262043 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
PHF3-201ENST00000262043 TONSLQ96HA7 1378 aa13.97□□□□□ -0.17
PHF3-201ENST00000262043 FKBP8Q14318 412 aa13.96□□□□□ -0.18
PHF3-201ENST00000262043 CHGAP10645 457 aaKnown RBP13.93□□□□□ -0.18
PHF3-201ENST00000262043 PLPPR3Q6T4P5 718 aa13.92□□□□□ -0.18
PHF3-201ENST00000262043 FAM9BQ8IZU0 186 aa13.91□□□□□ -0.18
PHF3-201ENST00000262043 ESF1Q9H501 851 aaKnown RBP13.91□□□□□ -0.18
PHF3-201ENST00000262043 HSP90AA1P07900 732 aaKnown RBP13.91□□□□□ -0.18
PHF3-201ENST00000262043 HNRNPUQ00839 825 aaKnown RBP eCLIP13.91□□□□□ -0.18
PHF3-201ENST00000262043 STAG3Q9UJ98 1225 aa13.91□□□□□ -0.18
PHF3-201ENST00000262043 SALL2Q9Y467 1007 aaPredicted RBP13.91□□□□□ -0.18
PHF3-201ENST00000262043 DDX10Q13206 875 aaKnown RBP13.89□□□□□ -0.19
PHF3-201ENST00000262043 CCDC180Q9P1Z9 1646 aa13.86□□□□□ -0.19
PHF3-201ENST00000262043 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
PHF3-201ENST00000262043 ANP32BQ92688 251 aaKnown RBP13.86□□□□□ -0.19
PHF3-201ENST00000262043 UPF2Q9HAU5 1272 aaKnown RBP13.85□□□□□ -0.19
PHF3-201ENST00000262043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.191e-6■■□□□ 13.7
PHF3-201ENST00000262043 CHIC2Q9UKJ5 165 aa13.83□□□□□ -0.2
PHF3-201ENST00000262043 TMC1Q8TDI8 760 aa13.81□□□□□ -0.2
PHF3-201ENST00000262043 EIF5BO60841 1220 aaKnown RBP13.79□□□□□ -0.2
PHF3-201ENST00000262043 ZCCHC6Q5VYS8 1495 aaKnown RBP13.78□□□□□ -0.2
PHF3-201ENST00000262043 KDM2AQ9Y2K7 1162 aa13.77□□□□□ -0.2
PHF3-201ENST00000262043 NBR1Q14596 966 aa13.77□□□□□ -0.21
PHF3-201ENST00000262043 CCDC136Q96JN2 1154 aa13.76□□□□□ -0.21
PHF3-201ENST00000262043 WDR43Q15061 677 aaKnown RBP eCLIP13.75□□□□□ -0.21
PHF3-201ENST00000262043 NPM1P06748 294 aaKnown RBP eCLIP13.75□□□□□ -0.21
PHF3-201ENST00000262043 ARXQ96QS3 562 aa13.72□□□□□ -0.21
PHF3-201ENST00000262043 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.72□□□□□ -0.21
PHF3-201ENST00000262043 HIRIP3Q9BW71 556 aaPredicted RBP13.71□□□□□ -0.21
PHF3-201ENST00000262043 MTUS2Q5JR59 1369 aa13.7□□□□□ -0.22
PHF3-201ENST00000262043 IRX6P78412 446 aaPredicted RBP13.7□□□□□ -0.22
PHF3-201ENST00000262043 MRS2Q9HD23 443 aa13.7□□□□□ -0.22
PHF3-201ENST00000262043 SCAF1Q9H7N4 1312 aaKnown RBP13.67□□□□□ -0.22
PHF3-201ENST00000262043 SENP3Q9H4L4 574 aaPredicted RBP13.67□□□□□ -0.22
PHF3-201ENST00000262043 TSPY4P0CV99 314 aa13.66□□□□□ -0.22
PHF3-201ENST00000262043 TSPY10P0CW01 314 aa13.66□□□□□ -0.22
PHF3-201ENST00000262043 MIER1Q8N108 512 aa13.64□□□□□ -0.23
PHF3-201ENST00000262043 CLIP1P30622 1438 aa13.63□□□□□ -0.23
PHF3-201ENST00000262043 CHMP7Q8WUX9 453 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms