RNA–Protein interactions for RNA: ENST00000503248.1

PHF3-206, Transcript of PHD finger protein 3, humanhuman

TSL 3

Gene PHF3, Length 529 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-206ENST00000503248 AEBP2Q6ZN18 517 aaPredicted RBP21.2■□□□□ 0.98
PHF3-206ENST00000503248 CHIC1Q5VXU3 224 aa20.33■□□□□ 0.85
PHF3-206ENST00000503248 SENP3Q9H4L4 574 aaPredicted RBP18.32■□□□□ 0.52
PHF3-206ENST00000503248 PHF23Q9BUL5 403 aaPredicted RBP17.92■□□□□ 0.46
PHF3-206ENST00000503248 POTEDQ86YR6 584 aa17.67■□□□□ 0.42
PHF3-206ENST00000503248 FOXD1Q16676 465 aa17.14■□□□□ 0.33
PHF3-206ENST00000503248 PLPPR3Q6T4P5 718 aa16.67■□□□□ 0.26
PHF3-206ENST00000503248 MSH5O43196 834 aa16.48■□□□□ 0.23
PHF3-206ENST00000503248 PIAS4Q8N2W9 510 aaPredicted RBP15.83■□□□□ 0.12
PHF3-206ENST00000503248 ADRA2BP18089 450 aa15.6■□□□□ 0.09
PHF3-206ENST00000503248 PPP6R1Q9UPN7 881 aa15.57■□□□□ 0.08
PHF3-206ENST00000503248 CACNB1Q02641 598 aaPredicted RBP14.74□□□□□ -0.05
PHF3-206ENST00000503248 PPP4R3CPQ6ZMV5 832 aa14.61□□□□□ -0.07
PHF3-206ENST00000503248 SCAF1Q9H7N4 1312 aaKnown RBP14.58□□□□□ -0.08
PHF3-206ENST00000503248 NCBP3Q53F19 620 aaKnown RBP14.44□□□□□ -0.1
PHF3-206ENST00000503248 KCNA4P22459 653 aa14.38□□□□□ -0.11
PHF3-206ENST00000503248 DMRT2Q9Y5R5 561 aa14.35□□□□□ -0.11
PHF3-206ENST00000503248 CNKSR2Q8WXI2 1034 aa14.26□□□□□ -0.13
PHF3-206ENST00000503248 MAPK8IP2Q13387 824 aaPredicted RBP14.23□□□□□ -0.13
PHF3-206ENST00000503248 NPM3O75607 178 aaKnown RBP14.04□□□□□ -0.16
PHF3-206ENST00000503248 RNF216Q9NWF9 866 aaPredicted RBP13.94□□□□□ -0.18
PHF3-206ENST00000503248 RNF39Q9H2S5 420 aa13.91□□□□□ -0.18
PHF3-206ENST00000503248 DCAF8L1A6NGE4 600 aa13.89□□□□□ -0.19
PHF3-206ENST00000503248 SLC4A1APQ9BWU0 796 aaKnown RBP13.83□□□□□ -0.2
PHF3-206ENST00000503248 DNAJC5BQ9UF47 199 aa13.83□□□□□ -0.2
PHF3-206ENST00000503248 HOXD11P31277 338 aaPredicted RBP13.81□□□□□ -0.2
PHF3-206ENST00000503248 C1QBPQ07021 282 aaKnown RBP13.69□□□□□ -0.22
PHF3-206ENST00000503248 POTEHQ6S545 545 aa13.68□□□□□ -0.22
PHF3-206ENST00000503248 EHMT2Q96KQ7 1210 aa13.5□□□□□ -0.25
PHF3-206ENST00000503248 FOXD4L1Q9NU39 408 aa13.32□□□□□ -0.28
PHF3-206ENST00000503248 CSRNP3Q8WYN3 585 aa13.3□□□□□ -0.28
PHF3-206ENST00000503248 SLC4A2P04920 1241 aa13.17□□□□□ -0.3
PHF3-206ENST00000503248 ZBTB22O15209 634 aa13.16□□□□□ -0.3
PHF3-206ENST00000503248 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.15□□□□□ -0.3
PHF3-206ENST00000503248 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
PHF3-206ENST00000503248 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.04□□□□□ -0.32
PHF3-206ENST00000503248 HNRNPUL2Q1KMD3 747 aaKnown RBP13.04□□□□□ -0.32
PHF3-206ENST00000503248 ATXN8OSP0DMR3 200 aa12.96□□□□□ -0.33
PHF3-206ENST00000503248 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
PHF3-206ENST00000503248 APLP2Q06481 763 aa12.91□□□□□ -0.34
PHF3-206ENST00000503248 U3KPZ7 1027 aaPredicted RBP12.89□□□□□ -0.35
PHF3-206ENST00000503248 DSG3P32926 999 aa12.72□□□□□ -0.37
PHF3-206ENST00000503248 CAPN15O75808 1086 aa12.62□□□□□ -0.39
PHF3-206ENST00000503248 ZNF219Q9P2Y4 722 aaPredicted RBP12.57□□□□□ -0.4
PHF3-206ENST00000503248 SPINK5Q9NQ38 1064 aaPredicted RBP12.54□□□□□ -0.4
PHF3-206ENST00000503248 ATF5Q9Y2D1 282 aaPredicted RBP12.49□□□□□ -0.41
PHF3-206ENST00000503248 TRHP20396 242 aaPredicted RBP12.4□□□□□ -0.42
PHF3-206ENST00000503248 SP7Q8TDD2 431 aaPredicted RBP12.37□□□□□ -0.43
PHF3-206ENST00000503248 CHRDL2Q6WN34 429 aa12.3□□□□□ -0.44
PHF3-206ENST00000503248 ZBTB12Q9Y330 459 aaPredicted RBP12.29□□□□□ -0.44
PHF3-206ENST00000503248 POLA2Q14181 598 aa12.25□□□□□ -0.45
PHF3-206ENST00000503248 FBLN2P98095 1184 aa12.23□□□□□ -0.45
PHF3-206ENST00000503248 ABCB7O75027 752 aa12.22□□□□□ -0.45
PHF3-206ENST00000503248 RBM42Q9BTD8 480 aaKnown RBP12.22□□□□□ -0.45
PHF3-206ENST00000503248 FKBP8Q14318 412 aa12.05□□□□□ -0.48
PHF3-206ENST00000503248 MKRN4PQ13434 485 aaPredicted RBP12.01□□□□□ -0.49
PHF3-206ENST00000503248 SPDYE4A6NLX3 237 aa11.94□□□□□ -0.5
PHF3-206ENST00000503248 SPDYE2BA6NHP3 402 aa11.88□□□□□ -0.51
PHF3-206ENST00000503248 HAX1O00165 279 aa11.88□□□□□ -0.51
PHF3-206ENST00000503248 SPDYE6P0CI01 402 aa11.88□□□□□ -0.51
PHF3-206ENST00000503248 SPDYE2Q495Y8 402 aa11.88□□□□□ -0.51
PHF3-206ENST00000503248 OSCARQ8IYS5 282 aa11.8□□□□□ -0.52
PHF3-206ENST00000503248 PROM2Q8N271 834 aa11.78□□□□□ -0.52
PHF3-206ENST00000503248 PIP4P2Q8N4L2 257 aa11.78□□□□□ -0.52
PHF3-206ENST00000503248 ZNF692Q9BU19 519 aaPredicted RBP11.78□□□□□ -0.52
PHF3-206ENST00000503248 FBXO3Q9UK99 471 aa11.78□□□□□ -0.52
PHF3-206ENST00000503248 SSUH2Q9Y2M2 353 aa11.74□□□□□ -0.53
PHF3-206ENST00000503248 PLSCR2Q9NRY7 297 aa11.72□□□□□ -0.53
PHF3-206ENST00000503248 AKT1S1Q96B36 256 aa11.71□□□□□ -0.53
PHF3-206ENST00000503248 STAG3Q9UJ98 1225 aa11.62□□□□□ -0.55
PHF3-206ENST00000503248 LHX8Q68G74 356 aa11.6□□□□□ -0.55
PHF3-206ENST00000503248 PABPN1Q86U42 306 aaKnown RBP eCLIP11.6□□□□□ -0.55
PHF3-206ENST00000503248 EVX2Q03828 476 aa11.58□□□□□ -0.56
PHF3-206ENST00000503248 REM2Q8IYK8 340 aaPredicted RBP11.58□□□□□ -0.56
PHF3-206ENST00000503248 FXR2P51116 673 aaKnown RBP eCLIP11.55□□□□□ -0.567e-11■■■□□ 15.8
PHF3-206ENST00000503248 SPDYE1Q8NFV5 336 aaPredicted RBP11.49□□□□□ -0.57
PHF3-206ENST00000503248 PITPNM1O00562 1244 aa11.47□□□□□ -0.57
PHF3-206ENST00000503248 VASPP50552 380 aaPredicted RBP11.47□□□□□ -0.57
PHF3-206ENST00000503248 PLEKHG5O94827 1062 aa11.42□□□□□ -0.58
PHF3-206ENST00000503248 AMER1Q5JTC6 1135 aaPredicted RBP11.42□□□□□ -0.58
PHF3-206ENST00000503248 ZBTB47Q9UFB7 747 aaPredicted RBP11.36□□□□□ -0.59
PHF3-206ENST00000503248 PLCD3Q8N3E9 789 aa11.33□□□□□ -0.6
PHF3-206ENST00000503248 GABBR2O75899 941 aa11.3□□□□□ -0.6
PHF3-206ENST00000503248 PRR29P0C7W0 189 aa11.3□□□□□ -0.6
PHF3-206ENST00000503248 MIER1Q8N108 512 aa11.3□□□□□ -0.6
PHF3-206ENST00000503248 CLEC11AQ9Y240 323 aa11.3□□□□□ -0.6
PHF3-206ENST00000503248 IFNLR1Q8IU57 520 aaPredicted RBP11.25□□□□□ -0.61
PHF3-206ENST00000503248 KLHL34Q8N239 644 aa11.24□□□□□ -0.61
PHF3-206ENST00000503248 C19orf67A6NJJ6 358 aa11.22□□□□□ -0.61
PHF3-206ENST00000503248 SPOCK2Q92563 424 aa11.21□□□□□ -0.61
PHF3-206ENST00000503248 PRKAR2AP13861 404 aaKnown RBP11.19□□□□□ -0.62
PHF3-206ENST00000503248 RTN4Q9NQC3 1192 aaKnown RBP11.18□□□□□ -0.62
PHF3-206ENST00000503248 NPM1P06748 294 aaKnown RBP eCLIP11.11□□□□□ -0.63
PHF3-206ENST00000503248 CREBZFQ9NS37 354 aa11.11□□□□□ -0.63
PHF3-206ENST00000503248 TRIM41Q8WV44 630 aa11.05□□□□□ -0.64
PHF3-206ENST00000503248 GSE1Q14687 1217 aa11.03□□□□□ -0.64
PHF3-206ENST00000503248 POTEIP0CG38 1075 aa11.02□□□□□ -0.65
PHF3-206ENST00000503248 MNX1P50219 401 aaPredicted RBP11□□□□□ -0.65
PHF3-206ENST00000503248 POTEMA6NI47 508 aa10.98□□□□□ -0.65
PHF3-206ENST00000503248 FAM212AQ96EL1 285 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms