Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RSPO3Q9BXY4 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 CLK3P2-201ENST00000427566 1453 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 CNN2P2-201ENST00000443536 909 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 CNN2P3-201ENST00000450201 906 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AC125807.1-201ENST00000483097 614 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AC069120.2-201ENST00000524091 540 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 DUX4L27-201ENST00000554796 1261 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AC092337.1-201ENST00000568699 1129 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AL136317.3-201ENST00000618497 906 ntBASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RSPO3Q9BXY4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AL691403.2-201ENST00000618460 490 ntBASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AC004840.1-201ENST00000636359 365 ntBASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AC117489.1-201ENST00000625169 3217 ntBASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.19□□□□□ -0.14
RSPO3Q9BXY4 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RSPO3Q9BXY4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
RSPO3Q9BXY4 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms