Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DRB4X5D2U9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DRB4X5D2U9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC17.37■□□□□ 0.37
HLA-DRB4X5D2U9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 AC022616.5-201ENST00000518796 181 ntBASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 AL033527.3-201ENST00000566366 1196 ntBASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DRB4X5D2U9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DRB4X5D2U9 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DRB4X5D2U9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DRB4X5D2U9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DRB4X5D2U9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DRB4X5D2U9 EED-207ENST00000528180 1745 ntTSL 5 BASIC17.35■□□□□ 0.37
HLA-DRB4X5D2U9 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DRB4X5D2U9 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HLA-DRB4X5D2U9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HLA-DRB4X5D2U9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DRB4X5D2U9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC17.33■□□□□ 0.37
HLA-DRB4X5D2U9 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DRB4X5D2U9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
HLA-DRB4X5D2U9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC17.33■□□□□ 0.36
HLA-DRB4X5D2U9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DRB4X5D2U9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC17.33■□□□□ 0.36
HLA-DRB4X5D2U9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC17.33■□□□□ 0.36
HLA-DRB4X5D2U9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DRB4X5D2U9 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HLA-DRB4X5D2U9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DRB4X5D2U9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 AC090877.2-201ENST00000558441 1738 ntBASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DRB4X5D2U9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms