Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 AC090877.2-201ENST00000558441 1738 ntBASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIF3AQ9Y2N7 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIF3AQ9Y2N7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIF3AQ9Y2N7 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HIF3AQ9Y2N7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HIF3AQ9Y2N7 LONRF2P2-201ENST00000439212 571 ntBASIC20.9■□□□□ 0.94
HIF3AQ9Y2N7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.9■□□□□ 0.94
HIF3AQ9Y2N7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HIF3AQ9Y2N7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HIF3AQ9Y2N7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HIF3AQ9Y2N7 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 ABHD17AP5-201ENST00000580133 923 ntBASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
HIF3AQ9Y2N7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.88■□□□□ 0.93
HIF3AQ9Y2N7 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HIF3AQ9Y2N7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.86■□□□□ 0.93
HIF3AQ9Y2N7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HIF3AQ9Y2N7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HIF3AQ9Y2N7 ABCB10P4-201ENST00000566803 2184 ntBASIC20.86■□□□□ 0.93
HIF3AQ9Y2N7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HIF3AQ9Y2N7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HIF3AQ9Y2N7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
HIF3AQ9Y2N7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 NTF6A-201ENST00000591175 560 ntBASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HIF3AQ9Y2N7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.83■□□□□ 0.93
HIF3AQ9Y2N7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
HIF3AQ9Y2N7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HIF3AQ9Y2N7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HIF3AQ9Y2N7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.83■□□□□ 0.93
HIF3AQ9Y2N7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
HIF3AQ9Y2N7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HIF3AQ9Y2N7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HIF3AQ9Y2N7 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.83■□□□□ 0.92
HIF3AQ9Y2N7 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIF3AQ9Y2N7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HIF3AQ9Y2N7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIF3AQ9Y2N7 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.82■□□□□ 0.92
HIF3AQ9Y2N7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HIF3AQ9Y2N7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HIF3AQ9Y2N7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIF3AQ9Y2N7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIF3AQ9Y2N7 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HIF3AQ9Y2N7 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIF3AQ9Y2N7 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.81■□□□□ 0.92
HIF3AQ9Y2N7 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.81■□□□□ 0.92
HIF3AQ9Y2N7 AC019171.1-201ENST00000601251 1056 ntBASIC20.81■□□□□ 0.92
HIF3AQ9Y2N7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms