Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.182e-12■■■■□ 22.2
DDX55Q8NHQ9 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.182e-12■■■■□ 22.2
DDX55Q8NHQ9 PIM3-202ENST00000467480 723 ntTSL 238.75■■■■□ 3.795e-9■■■■□ 22.2
DDX55Q8NHQ9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.955e-9■■■■□ 22.2
DDX55Q8NHQ9 MRPL11-206ENST00000534488 812 ntTSL 223.44■■□□□ 1.345e-9■■■■□ 22.2
DDX55Q8NHQ9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC22.88■■□□□ 1.255e-9■■■■□ 22.2
DDX55Q8NHQ9 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.565e-9■■■■□ 22.2
DDX55Q8NHQ9 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.435e-9■■■■□ 22.2
DDX55Q8NHQ9 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.34■□□□□ 0.215e-9■■■■□ 22.2
DDX55Q8NHQ9 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.15e-9■■■■□ 22.2
DDX55Q8NHQ9 MRPL11-202ENST00000329819 922 ntTSL 2 BASIC14.15□□□□□ -0.145e-9■■■■□ 22.2
DDX55Q8NHQ9 MRPL11-204ENST00000524576 2209 ntTSL 212.44□□□□□ -0.425e-9■■■■□ 22.2
DDX55Q8NHQ9 MRPL11-203ENST00000430466 1527 ntTSL 1 (best) BASIC11.82□□□□□ -0.525e-9■■■■□ 22.2
DDX55Q8NHQ9 UBA1-203ENST00000377351 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.775e-9■■■■□ 22.2
DDX55Q8NHQ9 MRPL11-205ENST00000528272 506 ntTSL 37.17□□□□□ -1.265e-9■■■■□ 22.2
DDX55Q8NHQ9 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC27.02■■□□□ 1.922e-8■■■■□ 22.1
DDX55Q8NHQ9 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.882e-8■■■■□ 22.1
DDX55Q8NHQ9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.692e-8■■■■□ 22.1
DDX55Q8NHQ9 ST6GALNAC6-212ENST00000485320 2357 ntTSL 523.6■■□□□ 1.372e-8■■■■□ 22.1
DDX55Q8NHQ9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.03■■□□□ 1.282e-8■■■■□ 22.1
DDX55Q8NHQ9 AL157935.2-202ENST00000548587 464 ntTSL 419.47■□□□□ 0.712e-8■■■■□ 22.1
DDX55Q8NHQ9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.672e-8■■■■□ 22.1
DDX55Q8NHQ9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.522e-8■■■■□ 22.1
DDX55Q8NHQ9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.462e-8■■■■□ 22.1
DDX55Q8NHQ9 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.82■□□□□ 0.442e-8■■■■□ 22.1
DDX55Q8NHQ9 TRIR-203ENST00000589590 930 ntTSL 222.75■■□□□ 1.232e-7■■■■□ 22.1
DDX55Q8NHQ9 MCM2-209ENST00000491422 2844 ntTSL 514.19□□□□□ -0.143e-19■■■■□ 22.1
DDX55Q8NHQ9 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.513e-6■■■■□ 22
DDX55Q8NHQ9 PDS5B-203ENST00000450460 5246 ntTSL 1 (best)3.49□□□□□ -1.853e-6■■■■□ 22
DDX55Q8NHQ9 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC29.69■■■□□ 2.342e-12■■■■□ 22
DDX55Q8NHQ9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.022e-9■■■■□ 22
DDX55Q8NHQ9 RAVER1-204ENST00000592208 4693 ntTSL 1 (best)15.94■□□□□ 0.142e-9■■■■□ 22
DDX55Q8NHQ9 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.082e-9■■■■□ 22
DDX55Q8NHQ9 RAVER1-201ENST00000293677 3595 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.352e-9■■■■□ 22
DDX55Q8NHQ9 RAVER1-208ENST00000617231 3501 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.562e-9■■■■□ 22
DDX55Q8NHQ9 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.093e-7■■■■□ 21.9
DDX55Q8NHQ9 PTPN23-206ENST00000602307 5119 ntTSL 213.04□□□□□ -0.323e-7■■■■□ 21.9
DDX55Q8NHQ9 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.044e-11■■■■□ 21.8
DDX55Q8NHQ9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.83■□□□□ 0.451e-13■■■■□ 21.8
DDX55Q8NHQ9 RRBP1-207ENST00000468428 2200 ntTSL 217.47■□□□□ 0.392e-27■■■■□ 21.8
DDX55Q8NHQ9 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.351e-13■■■■□ 21.8
DDX55Q8NHQ9 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.091e-13■■■■□ 21.8
DDX55Q8NHQ9 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.161e-13■■■■□ 21.8
DDX55Q8NHQ9 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.341e-13■■■■□ 21.8
DDX55Q8NHQ9 RRBP1-210ENST00000610403 3309 ntTSL 5 BASIC12.71□□□□□ -0.371e-13■■■■□ 21.8
DDX55Q8NHQ9 PTK7-206ENST00000461100 546 ntTSL 417.04■□□□□ 0.321e-12■■■■□ 21.8
DDX55Q8NHQ9 PTK7-219ENST00000494146 576 ntTSL 411.9□□□□□ -0.51e-12■■■■□ 21.8
DDX55Q8NHQ9 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.191e-12■■■■□ 21.8
DDX55Q8NHQ9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.887e-7■■■■□ 21.8
DDX55Q8NHQ9 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.26■□□□□ 0.357e-7■■■■□ 21.8
DDX55Q8NHQ9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.422e-8■■■■□ 21.8
DDX55Q8NHQ9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.81■■□□□ 1.882e-20■■■■□ 21.8
DDX55Q8NHQ9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC24.92■■□□□ 1.582e-20■■■■□ 21.8
DDX55Q8NHQ9 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.232e-20■■■■□ 21.8
DDX55Q8NHQ9 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.553e-7■■■■□ 21.7
DDX55Q8NHQ9 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.033e-7■■■■□ 21.7
DDX55Q8NHQ9 SUMF1-204ENST00000448413 3150 ntTSL 215.1■□□□□ 0.013e-7■■■■□ 21.7
DDX55Q8NHQ9 LGR5-206ENST00000550851 4095 ntTSL 212.16□□□□□ -0.463e-7■■■■□ 21.7
DDX55Q8NHQ9 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.232e-7■■■■□ 21.7
DDX55Q8NHQ9 LAMTOR5-205ENST00000531779 569 ntTSL 226.98■■□□□ 1.915e-44■■■■□ 21.7
DDX55Q8NHQ9 LAMTOR5-202ENST00000464240 1830 ntTSL 222.17■■□□□ 1.145e-44■■■■□ 21.7
DDX55Q8NHQ9 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.43■■□□□ 1.025e-44■■■■□ 21.7
DDX55Q8NHQ9 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.025e-44■■■■□ 21.7
DDX55Q8NHQ9 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.43■■□□□ 1.025e-44■■■■□ 21.7
DDX55Q8NHQ9 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.51■□□□□ 0.715e-44■■■■□ 21.7
DDX55Q8NHQ9 LAMTOR5-203ENST00000474861 1154 ntTSL 2 BASIC15.16■□□□□ 0.025e-44■■■■□ 21.7
DDX55Q8NHQ9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.242e-18■■■■□ 21.6
DDX55Q8NHQ9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.95■■□□□ 1.261e-6■■■■□ 21.6
DDX55Q8NHQ9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.341e-6■■■■□ 21.6
DDX55Q8NHQ9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.13■□□□□ 0.331e-6■■■■□ 21.6
DDX55Q8NHQ9 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC15.61■□□□□ 0.091e-6■■■■□ 21.6
DDX55Q8NHQ9 ADD1-210ENST00000503455 3206 ntTSL 5 BASIC12.41□□□□□ -0.421e-6■■■■□ 21.6
DDX55Q8NHQ9 ADD1-206ENST00000398129 3787 ntAPPRIS ALT1 TSL 2 BASIC11.52□□□□□ -0.571e-6■■■■□ 21.6
DDX55Q8NHQ9 ADD1-217ENST00000513328 3107 ntTSL 5 BASIC11.38□□□□□ -0.591e-6■■■■□ 21.6
DDX55Q8NHQ9 ADD1-218ENST00000513762 3581 ntTSL 310.93□□□□□ -0.661e-6■■■■□ 21.6
DDX55Q8NHQ9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.044e-7■■■■□ 21.6
DDX55Q8NHQ9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.844e-7■■■■□ 21.6
DDX55Q8NHQ9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.54e-7■■■■□ 21.6
DDX55Q8NHQ9 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.93■□□□□ 0.624e-7■■■■□ 21.6
DDX55Q8NHQ9 PTOV1-210ENST00000598325 1438 ntTSL 518.06■□□□□ 0.484e-7■■■■□ 21.6
DDX55Q8NHQ9 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.67■□□□□ 0.424e-7■■■■□ 21.6
DDX55Q8NHQ9 PTOV1-218ENST00000601612 1480 ntTSL 216.15■□□□□ 0.184e-7■■■■□ 21.6
DDX55Q8NHQ9 PTMS-203ENST00000538057 976 ntTSL 224.98■■□□□ 1.599e-15■■■■□ 21.6
DDX55Q8NHQ9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.599e-15■■■■□ 21.6
DDX55Q8NHQ9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.179e-15■■■■□ 21.6
DDX55Q8NHQ9 PTMS-204ENST00000540667 820 ntTSL 217.49■□□□□ 0.399e-15■■■■□ 21.6
DDX55Q8NHQ9 LSM2-209ENST00000470083 641 ntTSL 215.48■□□□□ 0.072e-9■■■■□ 21.6
DDX55Q8NHQ9 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.032e-9■■■■□ 21.6
DDX55Q8NHQ9 LSM2-212ENST00000477182 767 ntTSL 314.3□□□□□ -0.122e-9■■■■□ 21.6
DDX55Q8NHQ9 LSM2-214ENST00000493387 767 ntTSL 513.65□□□□□ -0.222e-9■■■■□ 21.6
DDX55Q8NHQ9 LSM2-210ENST00000470086 713 ntTSL 210.72□□□□□ -0.692e-9■■■■□ 21.6
DDX55Q8NHQ9 LSM2-213ENST00000491421 820 ntTSL 310.22□□□□□ -0.772e-9■■■■□ 21.6
DDX55Q8NHQ9 GAA-201ENST00000302262 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.443e-24■■■■□ 21.5
DDX55Q8NHQ9 GAA-202ENST00000390015 3549 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.493e-24■■■■□ 21.5
DDX55Q8NHQ9 ZNF414-206ENST00000596772 579 ntTSL 225.46■■□□□ 1.675e-12■■■■□ 21.4
DDX55Q8NHQ9 ARMC6-208ENST00000535795 1052 ntTSL 525.19■■□□□ 1.625e-12■■■■□ 21.4
DDX55Q8NHQ9 ZNF414-204ENST00000594748 462 ntTSL 324.67■■□□□ 1.545e-12■■■■□ 21.4
DDX55Q8NHQ9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.345e-12■■■■□ 21.4
DDX55Q8NHQ9 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.98■■□□□ 1.115e-12■■■■□ 21.4
DDX55Q8NHQ9 ZNF414-209ENST00000602128 443 ntTSL 221.34■■□□□ 1.015e-12■■■■□ 21.4
Retrieved 100 of 15,504 protein–RNA pairs in 80.4 ms