Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 PKM-203ENST00000389093 2279 ntTSL 5 BASIC19.29■□□□□ 0.68
CSPG4Q6UVK1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.28■□□□□ 0.68
CSPG4Q6UVK1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.27■□□□□ 0.68
CSPG4Q6UVK1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CSPG4Q6UVK1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CSPG4Q6UVK1 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CSPG4Q6UVK1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CSPG4Q6UVK1 ID1-201ENST00000376105 1233 ntBASIC19.25■□□□□ 0.67
CSPG4Q6UVK1 SERBP1P1-201ENST00000396021 1160 ntBASIC19.25■□□□□ 0.67
CSPG4Q6UVK1 CA15P2-201ENST00000611168 834 ntBASIC19.25■□□□□ 0.67
CSPG4Q6UVK1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CSPG4Q6UVK1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CSPG4Q6UVK1 DUX4L19-201ENST00000557448 1267 ntBASIC19.25■□□□□ 0.67
CSPG4Q6UVK1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.24■□□□□ 0.67
CSPG4Q6UVK1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 MIR4767-201ENST00000582827 78 ntBASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 IKBKGP1-201ENST00000612193 1073 ntBASIC19.23■□□□□ 0.67
CSPG4Q6UVK1 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 AC022517.1-201ENST00000592429 346 ntBASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 IRS3P-201ENST00000223076 1006 ntBASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CSPG4Q6UVK1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CSPG4Q6UVK1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CSPG4Q6UVK1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.21■□□□□ 0.67
CSPG4Q6UVK1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CSPG4Q6UVK1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.21■□□□□ 0.67
CSPG4Q6UVK1 AC005703.6-201ENST00000623265 1329 ntBASIC19.21■□□□□ 0.67
CSPG4Q6UVK1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 FOXO3B-201ENST00000395675 1928 ntBASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CSPG4Q6UVK1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.19■□□□□ 0.66
CSPG4Q6UVK1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms