Protein–RNA interactions for Protein: P18846

ATF1, Cyclic AMP-dependent transcription factor ATF-1, humanhuman

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF1P18846 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ATF1P18846 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ATF1P18846 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATF1P18846 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATF1P18846 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ATF1P18846 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
ATF1P18846 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ATF1P18846 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.34■□□□□ 0.85
ATF1P18846 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATF1P18846 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATF1P18846 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
ATF1P18846 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.33■□□□□ 0.85
ATF1P18846 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATF1P18846 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ATF1P18846 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATF1P18846 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.33■□□□□ 0.84
ATF1P18846 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATF1P18846 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.33■□□□□ 0.84
ATF1P18846 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
ATF1P18846 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ATF1P18846 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATF1P18846 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ATF1P18846 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATF1P18846 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
ATF1P18846 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ATF1P18846 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ATF1P18846 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ATF1P18846 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.32■□□□□ 0.84
ATF1P18846 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATF1P18846 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATF1P18846 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATF1P18846 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.32■□□□□ 0.84
ATF1P18846 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.31■□□□□ 0.84
ATF1P18846 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
ATF1P18846 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.31■□□□□ 0.84
ATF1P18846 AC007029.1-201ENST00000604183 313 ntBASIC20.31■□□□□ 0.84
ATF1P18846 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATF1P18846 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ATF1P18846 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ATF1P18846 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ATF1P18846 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.3■□□□□ 0.84
ATF1P18846 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ATF1P18846 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ATF1P18846 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ATF1P18846 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATF1P18846 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ATF1P18846 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ATF1P18846 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ATF1P18846 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
ATF1P18846 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATF1P18846 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATF1P18846 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATF1P18846 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATF1P18846 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.29■□□□□ 0.84
ATF1P18846 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATF1P18846 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
ATF1P18846 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
ATF1P18846 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.29■□□□□ 0.84
ATF1P18846 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATF1P18846 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATF1P18846 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.28■□□□□ 0.84
ATF1P18846 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ATF1P18846 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
ATF1P18846 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.28■□□□□ 0.84
ATF1P18846 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
ATF1P18846 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.28■□□□□ 0.84
ATF1P18846 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATF1P18846 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ATF1P18846 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
ATF1P18846 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATF1P18846 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
ATF1P18846 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATF1P18846 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATF1P18846 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.27■□□□□ 0.84
ATF1P18846 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.27■□□□□ 0.84
ATF1P18846 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATF1P18846 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATF1P18846 HLA-L-211ENST00000482052 1765 ntBASIC20.27■□□□□ 0.84
ATF1P18846 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATF1P18846 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.27■□□□□ 0.84
ATF1P18846 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
ATF1P18846 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ATF1P18846 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ATF1P18846 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ATF1P18846 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
ATF1P18846 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.26■□□□□ 0.83
ATF1P18846 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATF1P18846 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATF1P18846 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.26■□□□□ 0.83
ATF1P18846 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATF1P18846 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.26■□□□□ 0.83
ATF1P18846 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.26■□□□□ 0.83
ATF1P18846 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.26■□□□□ 0.83
ATF1P18846 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATF1P18846 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.26■□□□□ 0.83
ATF1P18846 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.26■□□□□ 0.83
ATF1P18846 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATF1P18846 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.25■□□□□ 0.83
ATF1P18846 AL117328.2-201ENST00000624617 1940 ntBASIC20.25■□□□□ 0.83
ATF1P18846 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms