Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV39A0A0B4J263 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV39A0A0B4J263 AC087393.1-201ENST00000582896 145 ntBASIC19.4■□□□□ 0.7
TRAV39A0A0B4J263 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV39A0A0B4J263 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV39A0A0B4J263 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
TRAV39A0A0B4J263 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TRAV39A0A0B4J263 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV39A0A0B4J263 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAV39A0A0B4J263 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV39A0A0B4J263 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.39■□□□□ 0.69
TRAV39A0A0B4J263 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAV39A0A0B4J263 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAV39A0A0B4J263 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV39A0A0B4J263 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 ABHD17AP5-201ENST00000580133 923 ntBASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.38■□□□□ 0.69
TRAV39A0A0B4J263 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 AC141586.4-201ENST00000624558 1573 ntBASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAV39A0A0B4J263 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV39A0A0B4J263 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 NTF6A-201ENST00000591175 560 ntBASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TRAV39A0A0B4J263 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV39A0A0B4J263 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV39A0A0B4J263 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.33■□□□□ 0.69
TRAV39A0A0B4J263 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV39A0A0B4J263 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV39A0A0B4J263 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAV39A0A0B4J263 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV39A0A0B4J263 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.33■□□□□ 0.68
TRAV39A0A0B4J263 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAV39A0A0B4J263 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAV39A0A0B4J263 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.33■□□□□ 0.68
TRAV39A0A0B4J263 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.33■□□□□ 0.68
TRAV39A0A0B4J263 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
TRAV39A0A0B4J263 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 LONRF2P2-201ENST00000439212 571 ntBASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms