Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC10.15□□□□□ -0.78
ALMS1Q8TCU4 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 HCG27-204ENST00000424675 895 ntTSL 3 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 AC012441.2-201ENST00000444843 739 ntBASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 PHBP15-201ENST00000574228 665 ntBASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC10.15□□□□□ -0.79
ALMS1Q8TCU4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AC106820.2-201ENST00000563775 3264 ntBASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 Z69890.1-201ENST00000382990 339 ntBASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AC004522.1-201ENST00000419978 654 ntBASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 BUD31-205ENST00000456893 512 ntTSL 5 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AC011247.3-201ENST00000603297 438 ntBASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 PEBP1P2-201ENST00000603980 558 ntBASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 STK16-203ENST00000409516 895 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AL391005.1-201ENST00000623953 2435 ntBASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC10.14□□□□□ -0.79
ALMS1Q8TCU4 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms