Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 AC138649.4-201ENST00000612222 287 ntBASIC15.73■□□□□ 0.11
PTPN4P29074 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.73■□□□□ 0.11
PTPN4P29074 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PTPN4P29074 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PTPN4P29074 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN4P29074 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PTPN4P29074 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
PTPN4P29074 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
PTPN4P29074 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PTPN4P29074 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
PTPN4P29074 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.72■□□□□ 0.11
PTPN4P29074 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 SPDYE14P-201ENST00000442619 822 ntBASIC15.72■□□□□ 0.11
PTPN4P29074 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 INGX-202ENST00000489074 768 ntBASIC15.72■□□□□ 0.11
PTPN4P29074 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.72■□□□□ 0.11
PTPN4P29074 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
PTPN4P29074 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.72■□□□□ 0.11
PTPN4P29074 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.72■□□□□ 0.11
PTPN4P29074 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
PTPN4P29074 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PTPN4P29074 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PTPN4P29074 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 AC092127.1-201ENST00000567093 3455 ntBASIC15.71■□□□□ 0.11
PTPN4P29074 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 AJ011931.1-201ENST00000618749 2492 ntBASIC15.71■□□□□ 0.11
PTPN4P29074 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.71■□□□□ 0.11
PTPN4P29074 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.71■□□□□ 0.11
PTPN4P29074 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 COX20P2-201ENST00000452636 358 ntBASIC15.71■□□□□ 0.11
PTPN4P29074 SLC25A39P2-201ENST00000537614 270 ntBASIC15.71■□□□□ 0.11
PTPN4P29074 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.71■□□□□ 0.11
PTPN4P29074 AC027307.2-201ENST00000591252 911 ntBASIC15.71■□□□□ 0.11
PTPN4P29074 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
PTPN4P29074 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.11
PTPN4P29074 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN4P29074 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms