Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 HLA-K-203ENST00000430151 1046 ntBASIC17.45■□□□□ 0.38
COL20A1Q9P218 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 AC079316.1-201ENST00000548397 411 ntBASIC17.45■□□□□ 0.38
COL20A1Q9P218 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.45■□□□□ 0.38
COL20A1Q9P218 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.45■□□□□ 0.38
COL20A1Q9P218 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL20A1Q9P218 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 RPL5P21-201ENST00000404620 815 ntBASIC17.44■□□□□ 0.38
COL20A1Q9P218 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 YBX1P6-201ENST00000442962 1002 ntBASIC17.44■□□□□ 0.38
COL20A1Q9P218 RPL13AP20-201ENST00000459725 609 ntBASIC17.44■□□□□ 0.38
COL20A1Q9P218 RNA5SP486-201ENST00000515961 83 ntBASIC17.44■□□□□ 0.38
COL20A1Q9P218 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 DUX4L45-201ENST00000566406 1057 ntBASIC17.44■□□□□ 0.38
COL20A1Q9P218 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.44■□□□□ 0.38
COL20A1Q9P218 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL20A1Q9P218 MST1L-201ENST00000442552 2185 ntBASIC17.43■□□□□ 0.38
COL20A1Q9P218 PKD1P1-201ENST00000458669 6805 ntBASIC17.43■□□□□ 0.38
COL20A1Q9P218 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL20A1Q9P218 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL20A1Q9P218 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL20A1Q9P218 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.43■□□□□ 0.38
COL20A1Q9P218 OR6D1P-203ENST00000641209 4860 ntBASIC17.43■□□□□ 0.38
COL20A1Q9P218 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.43■□□□□ 0.38
COL20A1Q9P218 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL20A1Q9P218 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.43■□□□□ 0.38
COL20A1Q9P218 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL20A1Q9P218 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL20A1Q9P218 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL20A1Q9P218 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
COL20A1Q9P218 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms