Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC114501.2-201ENST00000439631 535 ntBASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 SERBP1P5-201ENST00000510079 1181 ntBASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 AC079416.2-201ENST00000625035 1193 ntBASIC14.14□□□□□ -0.15
ATG4DQ86TL0 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 CICP11-201ENST00000434745 2827 ntBASIC14.14□□□□□ -0.15
ATG4DQ86TL0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4DQ86TL0 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AC092337.1-201ENST00000568699 1129 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AC009407.1-201ENST00000568958 598 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AC008761.3-201ENST00000624803 892 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AC004461.2-201ENST00000629517 803 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AGAP7P-201ENST00000582299 2062 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 AGAP14-201ENST00000624701 2060 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MROH4P-201ENST00000431302 1578 ntBASIC14.13□□□□□ -0.15
ATG4DQ86TL0 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.13□□□□□ -0.15
ATG4DQ86TL0 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4DQ86TL0 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms