Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 MIR648-201ENST00000385046 94 ntBASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 AC119751.2-201ENST00000504529 210 ntBASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 AC104596.2-201ENST00000512793 793 ntBASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 AC092552.1-201ENST00000547243 906 ntBASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC144BQ3MJ40 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 Z97205.2-201ENST00000564697 1639 ntBASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 AC234783.1-201ENST00000441761 496 ntBASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 LINC01115-203ENST00000606068 577 ntBASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC144BQ3MJ40 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.08■□□□□ 0.49
CCDC144BQ3MJ40 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms