Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SDHD-206ENST00000528182 754 ntTSL 3 BASIC12.84□□□□□ -0.35
NKX2-1P43699 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.84□□□□□ -0.35
NKX2-1P43699 PAM16-208ENST00000573553 722 ntTSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.84□□□□□ -0.35
NKX2-1P43699 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 REXO1L6P-202ENST00000619970 1078 ntBASIC12.84□□□□□ -0.35
NKX2-1P43699 AC004790.2-201ENST00000623588 572 ntBASIC12.84□□□□□ -0.35
NKX2-1P43699 AC005593.1-201ENST00000624894 515 ntBASIC12.84□□□□□ -0.35
NKX2-1P43699 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.84□□□□□ -0.35
NKX2-1P43699 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 BNIP3P1-202ENST00000550043 1585 ntBASIC12.84□□□□□ -0.35
NKX2-1P43699 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
NKX2-1P43699 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-1P43699 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-1P43699 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-1P43699 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.83□□□□□ -0.35
NKX2-1P43699 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-1P43699 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.83□□□□□ -0.35
NKX2-1P43699 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-1P43699 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.35
NKX2-1P43699 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.83□□□□□ -0.35
NKX2-1P43699 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.83□□□□□ -0.35
NKX2-1P43699 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
NKX2-1P43699 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 AL691432.1-201ENST00000596308 1422 ntBASIC12.83□□□□□ -0.36
NKX2-1P43699 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
NKX2-1P43699 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 SAPCD2P3-201ENST00000455031 850 ntBASIC12.83□□□□□ -0.36
NKX2-1P43699 AC108073.2-201ENST00000464002 357 ntBASIC12.83□□□□□ -0.36
NKX2-1P43699 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 SKP2-204ENST00000508514 821 ntTSL 3 BASIC12.83□□□□□ -0.36
NKX2-1P43699 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 AL356488.2-201ENST00000602755 427 ntBASIC12.83□□□□□ -0.36
NKX2-1P43699 AL009183.1-201ENST00000603760 355 ntBASIC12.83□□□□□ -0.36
NKX2-1P43699 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
NKX2-1P43699 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.83□□□□□ -0.36
NKX2-1P43699 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
NKX2-1P43699 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.82□□□□□ -0.36
NKX2-1P43699 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
NKX2-1P43699 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
NKX2-1P43699 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
NKX2-1P43699 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms