Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH3P22223 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDH3P22223 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CDH3P22223 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH3P22223 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH3P22223 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CDH3P22223 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.38■□□□□ 0.05
CDH3P22223 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDH3P22223 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CDH3P22223 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CDH3P22223 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.37■□□□□ 0.05
CDH3P22223 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.37■□□□□ 0.05
CDH3P22223 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 AL359258.3-201ENST00000622910 2331 ntBASIC15.37■□□□□ 0.05
CDH3P22223 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CDH3P22223 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 MIR648-201ENST00000385046 94 ntBASIC15.37■□□□□ 0.05
CDH3P22223 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CDH3P22223 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 SPTLC1P1-201ENST00000447199 261 ntBASIC15.37■□□□□ 0.05
CDH3P22223 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.37■□□□□ 0.05
CDH3P22223 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.37■□□□□ 0.05
CDH3P22223 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.37■□□□□ 0.05
CDH3P22223 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.37■□□□□ 0.05
CDH3P22223 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.37■□□□□ 0.05
CDH3P22223 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDH3P22223 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.37■□□□□ 0.05
CDH3P22223 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.36■□□□□ 0.05
CDH3P22223 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.36■□□□□ 0.05
CDH3P22223 AZGP1P1-201ENST00000411909 902 ntBASIC15.36■□□□□ 0.05
CDH3P22223 HIST3H2BA-201ENST00000436555 524 ntBASIC15.36■□□□□ 0.05
CDH3P22223 AC114501.2-201ENST00000439631 535 ntBASIC15.36■□□□□ 0.05
CDH3P22223 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.36■□□□□ 0.05
CDH3P22223 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.36■□□□□ 0.05
CDH3P22223 AC004461.2-201ENST00000629517 803 ntBASIC15.36■□□□□ 0.05
CDH3P22223 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDH3P22223 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.36■□□□□ 0.05
CDH3P22223 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CDH3P22223 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDH3P22223 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
CDH3P22223 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDH3P22223 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDH3P22223 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms