Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AL929302.1-201ENST00000426556 871 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 DBP-202ENST00000593500 712 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 MIR6125-201ENST00000618986 96 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 AC092299.1-201ENST00000632679 757 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 RN7SKP175-201ENST00000408472 289 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 AP000358.1-201ENST00000456260 156 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AP005264.6-204ENST00000588436 719 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 HCG18-241ENST00000602290 821 ntTSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 LINC01783-202ENST00000614408 828 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 BX284668.2-205ENST00000619677 828 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 AC009560.1-201ENST00000620208 434 ntBASIC11.81□□□□□ -0.52
COL6A5A8TX70 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
COL6A5A8TX70 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
COL6A5A8TX70 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 AP000593.2-201ENST00000542775 1433 ntBASIC11.8□□□□□ -0.52
COL6A5A8TX70 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 MIR3180-2-201ENST00000581748 88 ntBASIC11.8□□□□□ -0.52
COL6A5A8TX70 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 AC134043.2-201ENST00000624206 2238 ntBASIC11.8□□□□□ -0.52
COL6A5A8TX70 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 DPY19L2P5-201ENST00000456300 331 ntBASIC11.8□□□□□ -0.52
COL6A5A8TX70 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms