Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AL662844.4-201ENST00000606367 2838 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 AC026691.1-201ENST00000602502 2017 ntBASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMD1Q9UGP4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 PCDHA1-201ENST00000378133 2726 ntBASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 FAM197Y7-201ENST00000432892 766 ntBASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 AC005077.2-201ENST00000449786 690 ntBASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 PHKG1P2-201ENST00000457537 863 ntBASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 AP001582.1-201ENST00000525856 295 ntBASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 AC016629.1-201ENST00000596579 586 ntBASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMD1Q9UGP4 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.27■□□□□ 0.19
LIMD1Q9UGP4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AL592424.1-201ENST00000563624 1536 ntBASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 MIR663B-201ENST00000408361 115 ntBASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC245100.5-201ENST00000452108 331 ntBASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC078819.1-201ENST00000547454 765 ntBASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC012085.1-201ENST00000548270 765 ntBASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMD1Q9UGP4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms