Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.3■□□□□ 0.36
HPS3Q969F9 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HPS3Q969F9 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.3■□□□□ 0.36
HPS3Q969F9 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HPS3Q969F9 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.29■□□□□ 0.36
HPS3Q969F9 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.29■□□□□ 0.36
HPS3Q969F9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.29■□□□□ 0.36
HPS3Q969F9 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HPS3Q969F9 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HPS3Q969F9 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 UGT1A2P-201ENST00000454886 866 ntBASIC17.29■□□□□ 0.36
HPS3Q969F9 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.29■□□□□ 0.36
HPS3Q969F9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
HPS3Q969F9 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.29■□□□□ 0.36
HPS3Q969F9 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.29■□□□□ 0.36
HPS3Q969F9 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.29■□□□□ 0.36
HPS3Q969F9 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.29■□□□□ 0.36
HPS3Q969F9 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.29■□□□□ 0.36
HPS3Q969F9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.29■□□□□ 0.36
HPS3Q969F9 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HPS3Q969F9 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.29■□□□□ 0.36
HPS3Q969F9 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
HPS3Q969F9 AL359258.3-201ENST00000622910 2331 ntBASIC17.29■□□□□ 0.36
HPS3Q969F9 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
HPS3Q969F9 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 AL121723.1-201ENST00000445194 1519 ntBASIC17.28■□□□□ 0.36
HPS3Q969F9 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.28■□□□□ 0.36
HPS3Q969F9 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.28■□□□□ 0.36
HPS3Q969F9 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 AC114501.2-201ENST00000439631 535 ntBASIC17.28■□□□□ 0.36
HPS3Q969F9 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 ZNF890P-202ENST00000530367 1156 ntBASIC17.28■□□□□ 0.36
HPS3Q969F9 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.28■□□□□ 0.36
HPS3Q969F9 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HPS3Q969F9 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
HPS3Q969F9 AC015910.1-201ENST00000579400 975 ntBASIC17.28■□□□□ 0.36
HPS3Q969F9 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.28■□□□□ 0.36
HPS3Q969F9 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.28■□□□□ 0.36
HPS3Q969F9 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.28■□□□□ 0.36
HPS3Q969F9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.28■□□□□ 0.36
HPS3Q969F9 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.28■□□□□ 0.36
HPS3Q969F9 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 AC022144.1-201ENST00000602255 1580 ntBASIC17.28■□□□□ 0.36
HPS3Q969F9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS3Q969F9 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
HPS3Q969F9 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.27■□□□□ 0.36
HPS3Q969F9 AC126365.1-201ENST00000578585 1514 ntBASIC17.27■□□□□ 0.36
HPS3Q969F9 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 AGAP7P-201ENST00000582299 2062 ntBASIC17.27■□□□□ 0.36
HPS3Q969F9 AGAP14-201ENST00000624701 2060 ntBASIC17.27■□□□□ 0.36
HPS3Q969F9 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HPS3Q969F9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.27■□□□□ 0.36
HPS3Q969F9 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
HPS3Q969F9 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.27■□□□□ 0.36
HPS3Q969F9 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 AC135586.1-201ENST00000539323 574 ntBASIC17.27■□□□□ 0.36
HPS3Q969F9 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.27■□□□□ 0.36
HPS3Q969F9 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.27■□□□□ 0.36
HPS3Q969F9 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HPS3Q969F9 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms