Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMA1Q9UHB6 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 AL035456.1-201ENST00000456064 1369 ntBASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 AC005829.1-201ENST00000570002 483 ntBASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 AC015910.1-201ENST00000579400 975 ntBASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 AC140479.7-201ENST00000636301 2332 ntBASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMA1Q9UHB6 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 RBPMS2P1-201ENST00000437762 623 ntBASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 YBX1P5-201ENST00000509441 847 ntBASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 AC026150.2-201ENST00000564693 1156 ntBASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMA1Q9UHB6 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 SLED1-202ENST00000512051 380 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms