Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PHGDHO43175 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.62■□□□□ 0.09
PHGDHO43175 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PHGDHO43175 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PHGDHO43175 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PHGDHO43175 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PHGDHO43175 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PHGDHO43175 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PHGDHO43175 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.62■□□□□ 0.09
PHGDHO43175 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PHGDHO43175 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.61■□□□□ 0.09
PHGDHO43175 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.61■□□□□ 0.09
PHGDHO43175 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 AC007686.3-201ENST00000619017 3487 ntBASIC15.61■□□□□ 0.09
PHGDHO43175 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.61■□□□□ 0.09
PHGDHO43175 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.61■□□□□ 0.09
PHGDHO43175 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.61■□□□□ 0.09
PHGDHO43175 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.61■□□□□ 0.09
PHGDHO43175 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.61■□□□□ 0.09
PHGDHO43175 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.61■□□□□ 0.09
PHGDHO43175 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.61■□□□□ 0.09
PHGDHO43175 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.61■□□□□ 0.09
PHGDHO43175 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 AC003101.2-201ENST00000612557 442 ntBASIC15.61■□□□□ 0.09
PHGDHO43175 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.61■□□□□ 0.09
PHGDHO43175 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PHGDHO43175 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PHGDHO43175 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
PHGDHO43175 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PHGDHO43175 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.6■□□□□ 0.09
PHGDHO43175 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
PHGDHO43175 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PHGDHO43175 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.6■□□□□ 0.09
PHGDHO43175 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PHGDHO43175 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PHGDHO43175 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.6■□□□□ 0.09
PHGDHO43175 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.6■□□□□ 0.09
PHGDHO43175 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.6■□□□□ 0.09
PHGDHO43175 GPS2P2-201ENST00000430745 888 ntBASIC15.6■□□□□ 0.09
PHGDHO43175 RBPMS2P1-201ENST00000437762 623 ntBASIC15.6■□□□□ 0.09
PHGDHO43175 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.6■□□□□ 0.09
PHGDHO43175 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.6■□□□□ 0.09
PHGDHO43175 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.6■□□□□ 0.09
PHGDHO43175 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.6■□□□□ 0.09
PHGDHO43175 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PHGDHO43175 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.6■□□□□ 0.09
PHGDHO43175 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PHGDHO43175 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PHGDHO43175 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.6■□□□□ 0.09
PHGDHO43175 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.6■□□□□ 0.09
PHGDHO43175 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.59■□□□□ 0.09
PHGDHO43175 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.59■□□□□ 0.09
PHGDHO43175 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.59■□□□□ 0.09
PHGDHO43175 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.59■□□□□ 0.09
PHGDHO43175 CICP23-201ENST00000605013 2741 ntBASIC15.59■□□□□ 0.09
PHGDHO43175 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PHGDHO43175 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms