Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 AC124283.3-201ENST00000570869 594 ntBASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 AL607033.1-201ENST00000623900 1599 ntBASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
TRAIPQ9BWF2 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 MIR1909-201ENST00000411312 80 ntBASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 AC012183.1-201ENST00000625197 499 ntBASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 AC010491.1-201ENST00000563101 2797 ntBASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 HYMAI-201ENST00000635591 3347 ntBASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TRAIPQ9BWF2 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AC134915.1-201ENST00000426461 574 ntBASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AL359711.2-201ENST00000563105 872 ntBASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AC233724.13-201ENST00000598383 410 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms