Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 SLC7A15P-201ENST00000424028 1363 ntBASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 AL391825.1-201ENST00000457671 1364 ntBASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 TOMM22P5-201ENST00000416399 439 ntBASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 CRB3P1-201ENST00000449338 276 ntBASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTCHD1Q96NR3 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 LINC00554-201ENST00000564841 3011 ntBASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTCHD1Q96NR3 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 AL035633.1-201ENST00000406139 838 ntBASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 AC055876.2-201ENST00000531834 546 ntBASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 RARRES2P5-201ENST00000564013 466 ntBASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 AC027307.3-201ENST00000594262 1100 ntBASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms