Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RBM4-202ENST00000396053 1337 ntTSL 2 BASIC13.61□□□□□ -0.233e-6■■■■■ 99.6
SF3B1O75533 NRF1-202ENST00000311967 2481 ntTSL 1 (best) BASIC13.34□□□□□ -0.273e-6■■■■■ 99.6
SF3B1O75533 CENPT-227ENST00000568495 1098 ntTSL 513.14□□□□□ -0.311e-6■■■■■ 99.6
SF3B1O75533 NRF1-201ENST00000223190 2424 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.313e-6■■■■■ 99.6
SF3B1O75533 NRF1-205ENST00000393232 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.553e-6■■■■■ 99.6
SF3B1O75533 HOXB7-203ENST00000567101 528 ntTSL 211.38□□□□□ -0.594e-6■■■■■ 99.6
SF3B1O75533 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 11e-6■■■■■ 99.6
SF3B1O75533 FAM193B-208ENST00000506955 4604 ntTSL 1 (best)16.54■□□□□ 0.241e-6■■■■■ 99.6
SF3B1O75533 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.614e-6■■■■■ 99.6
SF3B1O75533 SMARCC1-202ENST00000425518 3827 ntTSL 27.69□□□□□ -1.184e-6■■■■■ 99.6
SF3B1O75533 E2F4-206ENST00000565849 639 ntTSL 329.45■■■□□ 2.313e-6■■■■■ 99.5
SF3B1O75533 E2F4-213ENST00000569573 849 ntTSL 328.34■■■□□ 2.133e-6■■■■■ 99.5
SF3B1O75533 E2F4-202ENST00000561904 897 ntTSL 319.54■□□□□ 0.723e-6■■■■■ 99.5
SF3B1O75533 E2F4-204ENST00000564718 688 ntTSL 313.88□□□□□ -0.193e-6■■■■■ 99.5
SF3B1O75533 E2F4-212ENST00000568839 944 ntTSL 312.53□□□□□ -0.43e-6■■■■■ 99.5
SF3B1O75533 AP2M1-215ENST00000468048 1172 ntTSL 1 (best)17.23■□□□□ 0.359e-7■■■■■ 99.5
SF3B1O75533 AP2M1-209ENST00000448139 601 ntTSL 516.26■□□□□ 0.199e-7■■■■■ 99.5
SF3B1O75533 AP2M1-216ENST00000472560 910 ntTSL 216.01■□□□□ 0.159e-7■■■■■ 99.5
SF3B1O75533 AP2M1-205ENST00000431779 602 ntTSL 312.46□□□□□ -0.419e-7■■■■■ 99.5
SF3B1O75533 AP2M1-206ENST00000432591 802 ntTSL 512.28□□□□□ -0.449e-7■■■■■ 99.5
SF3B1O75533 AP2M1-221ENST00000490151 570 ntTSL 510.09□□□□□ -0.799e-7■■■■■ 99.5
SF3B1O75533 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.116e-7■■■■■ 99.5
SF3B1O75533 AKT2-201ENST00000311278 1393 ntTSL 1 (best) BASIC12.78□□□□□ -0.366e-6■■■■■ 99.5
SF3B1O75533 PPP2R3C-202ENST00000553273 1402 ntTSL 1 (best)14.49□□□□□ -0.093e-6■■■■■ 99.5
SF3B1O75533 PPP2R3C-201ENST00000261475 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.43e-6■■■■■ 99.5
SF3B1O75533 PPP2R3C-217ENST00000557217 1846 ntTSL 1 (best)11.85□□□□□ -0.513e-6■■■■■ 99.5
SF3B1O75533 PPP2R3C-204ENST00000554222 1719 ntTSL 211.69□□□□□ -0.543e-6■■■■■ 99.5
SF3B1O75533 PPP2R3C-211ENST00000555614 676 ntTSL 56.99□□□□□ -1.293e-6■■■■■ 99.5
SF3B1O75533 PPP2R3C-214ENST00000555726 546 ntTSL 34.15□□□□□ -1.753e-6■■■■■ 99.5
SF3B1O75533 PPP2R3C-209ENST00000554899 762 ntTSL 33.81□□□□□ -1.83e-6■■■■■ 99.5
SF3B1O75533 CBFA2T3-211ENST00000570046 284 ntTSL 310.58□□□□□ -0.712e-6■■■■■ 99.5
SF3B1O75533 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.69■■□□□ 1.385e-6■■■■■ 99.5
SF3B1O75533 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.31■□□□□ 0.365e-6■■■■■ 99.5
SF3B1O75533 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.88■□□□□ 0.295e-6■■■■■ 99.5
SF3B1O75533 HACD3-207ENST00000566074 1658 ntTSL 5 BASIC13.95□□□□□ -0.185e-6■■■■■ 99.5
SF3B1O75533 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC13.83□□□□□ -0.25e-6■■■■■ 99.5
SF3B1O75533 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.275e-6■■■■■ 99.5
SF3B1O75533 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.74□□□□□ -1.495e-6■■■■■ 99.5
SF3B1O75533 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.84■■□□□ 1.092e-7■■■■■ 99.4
SF3B1O75533 RNF121-210ENST00000530058 571 ntTSL 421.6■■□□□ 1.052e-7■■■■■ 99.4
SF3B1O75533 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.62■□□□□ 0.736e-6■■■■■ 99.4
SF3B1O75533 RNF121-212ENST00000530655 786 ntTSL 319.39■□□□□ 0.692e-7■■■■■ 99.4
SF3B1O75533 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.592e-7■■■■■ 99.4
SF3B1O75533 RNF121-209ENST00000528683 721 ntTSL 217.92■□□□□ 0.462e-7■■■■■ 99.4
SF3B1O75533 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.82■□□□□ 0.442e-7■■■■■ 99.4
SF3B1O75533 RNF121-204ENST00000490867 840 ntTSL 517.53■□□□□ 0.42e-7■■■■■ 99.4
SF3B1O75533 GLCCI1-202ENST00000414914 575 ntAPPRIS ALT2 TSL 317.5■□□□□ 0.394e-6■■■■■ 99.4
SF3B1O75533 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.46■□□□□ 0.396e-6■■■■■ 99.4
SF3B1O75533 GLCCI1-203ENST00000430798 581 ntAPPRIS ALT2 TSL 316.83■□□□□ 0.284e-6■■■■■ 99.4
SF3B1O75533 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.236e-6■■■■■ 99.4
SF3B1O75533 RNF4-210ENST00000508235 603 ntTSL 316.29■□□□□ 0.24e-6■■■■■ 99.4
SF3B1O75533 RNF121-202ENST00000393711 608 ntTSL 516.28■□□□□ 0.22e-7■■■■■ 99.4
SF3B1O75533 SFI1-212ENST00000452250 2625 ntTSL 214.93□□□□□ -0.028e-6■■■■■ 99.4
SF3B1O75533 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC14.57□□□□□ -0.082e-7■■■■■ 99.4
SF3B1O75533 RNF121-207ENST00000526549 2375 ntTSL 214.4□□□□□ -0.12e-7■■■■■ 99.4
SF3B1O75533 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.254e-6■■■■■ 99.4
SF3B1O75533 RNF121-206ENST00000525243 812 ntTSL 213.33□□□□□ -0.282e-7■■■■■ 99.4
SF3B1O75533 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.424e-6■■■■■ 99.4
SF3B1O75533 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.434e-6■■■■■ 99.4
SF3B1O75533 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.464e-6■■■■■ 99.4
SF3B1O75533 RYR1-202ENST00000359596 15117 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.461e-6■■■■■ 99.4
SF3B1O75533 MADD-207ENST00000402799 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.474e-6■■■■■ 99.4
SF3B1O75533 MADD-206ENST00000402192 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.524e-6■■■■■ 99.4
SF3B1O75533 MADD-210ENST00000407859 5744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.564e-6■■■■■ 99.4
SF3B1O75533 MADD-202ENST00000342922 6005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.64e-6■■■■■ 99.4
SF3B1O75533 RYR1-201ENST00000355481 15377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.641e-6■■■■■ 99.4
SF3B1O75533 ZNF217-204ENST00000437222 746 ntTSL 210.79□□□□□ -0.681e-6■■■■■ 99.4
SF3B1O75533 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.771e-6■■■■■ 99.4
SF3B1O75533 MADD-205ENST00000395344 4988 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.784e-6■■■■■ 99.4
SF3B1O75533 ZNF217-202ENST00000371471 5796 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.791e-6■■■■■ 99.4
SF3B1O75533 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.75□□□□□ -1.339e-7■■■■■ 99.4
SF3B1O75533 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.86□□□□□ -1.479e-7■■■■■ 99.4
SF3B1O75533 GLCCI1-207ENST00000474269 691 ntTSL 55.69□□□□□ -1.54e-6■■■■■ 99.4
SF3B1O75533 KIAA1328-210ENST00000592611 1798 ntTSL 216.55■□□□□ 0.243e-6■■■■■ 99.4
SF3B1O75533 KIAA1328-204ENST00000587139 3256 ntTSL 511.99□□□□□ -0.493e-6■■■■■ 99.4
SF3B1O75533 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC8.67□□□□□ -1.023e-6■■■■■ 99.4
SF3B1O75533 KIAA1328-206ENST00000590617 1835 ntTSL 1 (best)6.35□□□□□ -1.393e-6■■■■■ 99.4
SF3B1O75533 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.413e-6■■■■■ 99.4
SF3B1O75533 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.89■□□□□ 0.295e-6■■■■■ 99.3
SF3B1O75533 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.97■□□□□ 0.155e-6■■■■■ 99.3
SF3B1O75533 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.145e-6■■■■■ 99.3
SF3B1O75533 MAPK14-206ENST00000474429 823 ntTSL 512.27□□□□□ -0.455e-6■■■■■ 99.3
SF3B1O75533 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC7.61□□□□□ -1.195e-6■■■■■ 99.3
SF3B1O75533 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.46■□□□□ 0.554e-8■■■■■ 99.3
SF3B1O75533 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.67■□□□□ 0.581e-6■■■■■ 99.3
SF3B1O75533 PTMA-208ENST00000448874 1108 ntTSL 218.37■□□□□ 0.538e-7■■■■■ 99.3
SF3B1O75533 PTMA-212ENST00000481928 1635 ntTSL 317.95■□□□□ 0.468e-7■■■■■ 99.3
SF3B1O75533 PTMA-211ENST00000468027 621 ntTSL 1 (best)14.15□□□□□ -0.158e-7■■■■■ 99.3
SF3B1O75533 PTMA-209ENST00000466801 784 ntTSL 511.66□□□□□ -0.548e-7■■■■■ 99.3
SF3B1O75533 PTMA-204ENST00000409683 933 ntAPPRIS ALT1 TSL 3 BASIC11.38□□□□□ -0.598e-7■■■■■ 99.3
SF3B1O75533 PTMA-203ENST00000409321 735 ntTSL 3 BASIC11.17□□□□□ -0.628e-7■■■■■ 99.3
SF3B1O75533 PTMA-201ENST00000341369 1212 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.638e-7■■■■■ 99.3
SF3B1O75533 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.728e-7■■■■■ 99.3
SF3B1O75533 GRB10-210ENST00000407526 2279 ntTSL 1 (best) BASIC11.93□□□□□ -0.53e-6■■■■■ 99.2
SF3B1O75533 GRB10-209ENST00000406641 2700 ntTSL 5 BASIC9.45□□□□□ -0.93e-6■■■■■ 99.2
SF3B1O75533 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.86■■□□□ 1.093e-6■■■■■ 99.2
SF3B1O75533 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.04■□□□□ 0.163e-6■■■■■ 99.2
SF3B1O75533 PARN-203ENST00000437198 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.313e-6■■■■■ 99.2
SF3B1O75533 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.78□□□□□ -1.163e-6■■■■■ 99.2
SF3B1O75533 UBE2D2-204ENST00000505007 1170 ntTSL 321.04■□□□□ 0.968e-7■■■■■ 99.2
Retrieved 100 of 46,956 protein–RNA pairs in 1007.3 ms