RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 NISCHQ9Y2I1 1504 aa36.12■■■■□ 3.37
RNF4-210ENST00000508235 CCDC180Q9P1Z9 1646 aa32.13■■■□□ 2.73
RNF4-210ENST00000508235 ABCC9O60706 1549 aa31.19■■■□□ 2.58
RNF4-210ENST00000508235 NACADO15069 1562 aa30.15■■■□□ 2.42
RNF4-210ENST00000508235 RB1CC1Q8TDY2 1594 aa30.15■■■□□ 2.42
RNF4-210ENST00000508235 ZCCHC6Q5VYS8 1495 aaKnown RBP30.12■■■□□ 2.41
RNF4-210ENST00000508235 DCAF8L2P0C7V8 631 aa30.1■■■□□ 2.41
RNF4-210ENST00000508235 MYO15BQ96JP2 1530 aa30.04■■■□□ 2.4
RNF4-210ENST00000508235 DCAF1Q9Y4B6 1507 aa29.94■■■□□ 2.38
RNF4-210ENST00000508235 UNC13AQ9UPW8 1703 aa29.45■■■□□ 2.31
RNF4-210ENST00000508235 SCRIBQ14160 1630 aa29.25■■■□□ 2.27
RNF4-210ENST00000508235 BICRAQ9NZM4 1560 aa29.16■■■□□ 2.26
RNF4-210ENST00000508235 PABPN1Q86U42 306 aaKnown RBP eCLIP29.14■■■□□ 2.26
RNF4-210ENST00000508235 SHROOM4Q9ULL8 1493 aa28.98■■■□□ 2.23
RNF4-210ENST00000508235 DNAJC5BQ9UF47 199 aa28.43■■■□□ 2.14
RNF4-210ENST00000508235 EIF4G1Q04637 1599 aaKnown RBP28.41■■■□□ 2.14
RNF4-210ENST00000508235 CC2D2AQ9P2K1 1620 aa28.26■■■□□ 2.11
RNF4-210ENST00000508235 CECR2Q9BXF3 1484 aa28.06■■■□□ 2.08
RNF4-210ENST00000508235 BAZ1AQ9NRL2 1556 aaPredicted RBP28.03■■■□□ 2.08
RNF4-210ENST00000508235 SMARCA4P51532 1647 aa28.01■■■□□ 2.07
RNF4-210ENST00000508235 SMARCA2P51531 1590 aa27.84■■■□□ 2.05
RNF4-210ENST00000508235 MROH2BQ7Z745 1585 aa27.81■■■□□ 2.04
RNF4-210ENST00000508235 ATAD2BQ9ULI0 1458 aa27.8■■■□□ 2.04
RNF4-210ENST00000508235 NCAPD3P42695 1498 aa27.78■■■□□ 2.04
RNF4-210ENST00000508235 PEG3Q9GZU2 1588 aa27.75■■■□□ 2.03
RNF4-210ENST00000508235 HMGXB3Q12766 1538 aa27.69■■■□□ 2.02
RNF4-210ENST00000508235 BAZ1BQ9UIG0 1483 aaKnown RBP27.62■■■□□ 2.01
RNF4-210ENST00000508235 RSF1Q96T23 1441 aaPredicted RBP27.55■■■□□ 2
RNF4-210ENST00000508235 WIZO95785 1651 aa27.53■■■□□ 2
RNF4-210ENST00000508235 TOP2AP11388 1531 aaKnown RBP27.28■■□□□ 1.96
RNF4-210ENST00000508235 LAMC3Q9Y6N6 1575 aa27.07■■□□□ 1.92
RNF4-210ENST00000508235 NESP48681 1621 aa27.01■■□□□ 1.92
RNF4-210ENST00000508235 CADPSQ9ULU8 1353 aa26.97■■□□□ 1.91
RNF4-210ENST00000508235 SUPT5HO00267 1087 aaKnown RBP26.94■■□□□ 1.9
RNF4-210ENST00000508235 ERCC6Q03468 1493 aa26.93■■□□□ 1.9
RNF4-210ENST00000508235 CCDC88BA6NC98 1476 aa26.92■■□□□ 1.9
RNF4-210ENST00000508235 PDS5BQ9NTI5 1447 aa26.87■■□□□ 1.89
RNF4-210ENST00000508235 CFTRP13569 1480 aa26.84■■□□□ 1.89
RNF4-210ENST00000508235 KIF21AQ7Z4S6 1674 aa26.76■■□□□ 1.87
RNF4-210ENST00000508235 PRDM2Q13029 1718 aa26.75■■□□□ 1.87
RNF4-210ENST00000508235 FANCD2Q9BXW9 1451 aa26.67■■□□□ 1.86
RNF4-210ENST00000508235 CEP164Q9UPV0 1460 aa26.65■■□□□ 1.86
RNF4-210ENST00000508235 THOC2Q8NI27 1593 aaKnown RBP26.63■■□□□ 1.85
RNF4-210ENST00000508235 CUX2O14529 1486 aa26.62■■□□□ 1.85
RNF4-210ENST00000508235 MRC2Q9UBG0 1479 aa26.57■■□□□ 1.84
RNF4-210ENST00000508235 WDR62O43379 1518 aa26.48■■□□□ 1.83
RNF4-210ENST00000508235 URB2Q14146 1524 aaKnown RBP26.36■■□□□ 1.81
RNF4-210ENST00000508235 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
RNF4-210ENST00000508235 DNMBPQ6XZF7 1577 aa26.26■■□□□ 1.79
RNF4-210ENST00000508235 TOPBP1Q92547 1522 aa26.26■■□□□ 1.79
RNF4-210ENST00000508235 IFT140Q96RY7 1462 aa26.09■■□□□ 1.77
RNF4-210ENST00000508235 CUX1P39880 1505 aa26.09■■□□□ 1.77
RNF4-210ENST00000508235 POLA1P09884 1462 aaPredicted RBP26.03■■□□□ 1.76
RNF4-210ENST00000508235 WRNQ14191 1432 aaPredicted RBP eCLIP26■■□□□ 1.75
RNF4-210ENST00000508235 FGD5Q6ZNL6 1462 aa25.99■■□□□ 1.75
RNF4-210ENST00000508235 TARBP1Q13395 1621 aaKnown RBP25.96■■□□□ 1.75
RNF4-210ENST00000508235 BIVM-ERCC5R4GMW8 1640 aa25.96■■□□□ 1.75
RNF4-210ENST00000508235 TOP2BQ02880 1626 aa25.94■■□□□ 1.74
RNF4-210ENST00000508235 SOGA1O94964 1423 aa25.94■■□□□ 1.74
RNF4-210ENST00000508235 SYNJ1O43426 1573 aa25.9■■□□□ 1.74
RNF4-210ENST00000508235 ZNF608Q9ULD9 1512 aaPredicted RBP25.88■■□□□ 1.73
RNF4-210ENST00000508235 RAD54L2Q9Y4B4 1467 aa25.88■■□□□ 1.73
RNF4-210ENST00000508235 WDR97A6NE52 1622 aa25.85■■□□□ 1.73
RNF4-210ENST00000508235 EIF4G3O43432 1585 aaKnown RBP25.84■■□□□ 1.73
RNF4-210ENST00000508235 ABCA10Q8WWZ4 1543 aa25.77■■□□□ 1.72
RNF4-210ENST00000508235 AQRO60306 1485 aaKnown RBP eCLIP25.76■■□□□ 1.712e-28■■■■■ 39.7
RNF4-210ENST00000508235 TDRD9Q8NDG6 1382 aaKnown RBP25.74■■□□□ 1.71
RNF4-210ENST00000508235 ABCA5Q8WWZ7 1642 aa25.66■■□□□ 1.7
RNF4-210ENST00000508235 GAPVD1Q14C86 1478 aa25.66■■□□□ 1.7
RNF4-210ENST00000508235 GRIN2BQ13224 1484 aa25.64■■□□□ 1.69
RNF4-210ENST00000508235 PBRM1Q86U86 1689 aa25.62■■□□□ 1.69
RNF4-210ENST00000508235 DNAJC5Q9H3Z4 198 aa25.58■■□□□ 1.69
RNF4-210ENST00000508235 MAGI1Q96QZ7 1491 aaPredicted RBP25.58■■□□□ 1.69
RNF4-210ENST00000508235 SNAPC4Q5SXM2 1469 aa25.56■■□□□ 1.68
RNF4-210ENST00000508235 OSCARQ8IYS5 282 aa25.53■■□□□ 1.68
RNF4-210ENST00000508235 CHD1O14646 1710 aa25.51■■□□□ 1.67
RNF4-210ENST00000508235 ERICH3Q5RHP9 1530 aa25.49■■□□□ 1.67
RNF4-210ENST00000508235 TRIM41Q8WV44 630 aa25.49■■□□□ 1.67
RNF4-210ENST00000508235 KIF27Q86VH2 1401 aa25.47■■□□□ 1.67
RNF4-210ENST00000508235 SYNJ2O15056 1496 aa25.46■■□□□ 1.67
RNF4-210ENST00000508235 FBLN2P98095 1184 aa25.45■■□□□ 1.66
RNF4-210ENST00000508235 CHMP7Q8WUX9 453 aaPredicted RBP25.43■■□□□ 1.66
RNF4-210ENST00000508235 ADAMTS12P58397 1594 aa25.39■■□□□ 1.66
RNF4-210ENST00000508235 FHAD1B1AJZ9 1412 aa25.37■■□□□ 1.65
RNF4-210ENST00000508235 CUL7Q14999 1698 aa25.31■■□□□ 1.64
RNF4-210ENST00000508235 GRIN2AQ12879 1464 aa25.3■■□□□ 1.64
RNF4-210ENST00000508235 IGF1RP08069 1367 aa25.3■■□□□ 1.64
RNF4-210ENST00000508235 CHIC1Q5VXU3 224 aa25.21■■□□□ 1.63
RNF4-210ENST00000508235 CLASP1Q7Z460 1538 aa25.21■■□□□ 1.63
RNF4-210ENST00000508235 RUSC2Q8N2Y8 1516 aa25.18■■□□□ 1.62
RNF4-210ENST00000508235 CARMIL1Q5VZK9 1371 aa25.18■■□□□ 1.62
RNF4-210ENST00000508235 NUP160Q12769 1436 aa25.17■■□□□ 1.62
RNF4-210ENST00000508235 CEP170Q5SW79 1584 aa25.14■■□□□ 1.62
RNF4-210ENST00000508235 EEA1Q15075 1411 aa25.11■■□□□ 1.61
RNF4-210ENST00000508235 RIMBP3CA6NJZ7 1639 aa25.08■■□□□ 1.61
RNF4-210ENST00000508235 RIMBP3BA6NNM3 1639 aa25.08■■□□□ 1.61
RNF4-210ENST00000508235 RIMBP3Q9UFD9 1639 aa25.08■■□□□ 1.61
RNF4-210ENST00000508235 ARHGEF11O15085 1522 aa25.08■■□□□ 1.61
RNF4-210ENST00000508235 RAPGEF2Q9Y4G8 1499 aa25.07■■□□□ 1.6
RNF4-210ENST00000508235 CSRNP3Q8WYN3 585 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms