Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 AC005498.2-205ENST00000593218 784 ntBASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 NORAD-201ENST00000565493 5339 ntBASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 AC138035.3-201ENST00000622706 2791 ntBASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 AL109954.1-202ENST00000564051 2148 ntBASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 CYMP-203ENST00000474680 1263 ntBASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 AC004890.2-204ENST00000481968 304 ntBASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 AC093214.1-201ENST00000511688 1107 ntBASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
AP4E1Q9UPM8 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4E1Q9UPM8 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 BASP1P1-201ENST00000430708 665 ntBASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 AC114501.2-201ENST00000439631 535 ntBASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 AC009407.1-201ENST00000568958 598 ntBASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 AC004461.2-201ENST00000629517 803 ntBASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4E1Q9UPM8 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms