Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AL512638.1-201ENST00000457493 794 ntBASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC092364.2-202ENST00000597012 1073 ntBASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC008738.7-201ENST00000609744 511 ntBASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AJ011932.1-201ENST00000621707 465 ntBASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 AC004461.2-201ENST00000629517 803 ntBASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ATG4BQ9Y4P1 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 AC022144.1-201ENST00000602255 1580 ntBASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 AL513477.1-201ENST00000602865 2407 ntBASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 AC015922.1-201ENST00000421102 1152 ntBASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 AC114501.2-201ENST00000439631 535 ntBASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 INGX-202ENST00000489074 768 ntBASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.85□□□□□ -0.03
ATG4BQ9Y4P1 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms