Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -09e-6■□□□□ 10.4
YBX3P16989 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -09e-6■□□□□ 10.4
YBX3P16989 TRPV2-205ENST00000577277 473 ntTSL 314.96□□□□□ -0.019e-6■□□□□ 10.4
YBX3P16989 MRPL27-203ENST00000503633 742 ntTSL 3 BASIC14.82□□□□□ -0.049e-6■□□□□ 10.4
YBX3P16989 DDX41-219ENST00000629036 606 ntTSL 4 BASIC14.76□□□□□ -0.059e-6■□□□□ 10.4
YBX3P16989 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.059e-6■□□□□ 10.4
YBX3P16989 TMEM208-210ENST00000565201 832 ntTSL 2 BASIC14.7□□□□□ -0.069e-6■□□□□ 10.4
YBX3P16989 MRPL27-204ENST00000507088 732 ntTSL 3 BASIC14.43□□□□□ -0.19e-6■□□□□ 10.4
YBX3P16989 MRPL27-205ENST00000508200 636 ntTSL 314.2□□□□□ -0.149e-6■□□□□ 10.4
YBX3P16989 TMEM120A-211ENST00000485200 590 ntTSL 314.05□□□□□ -0.169e-6■□□□□ 10.4
YBX3P16989 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC14.01□□□□□ -0.179e-6■□□□□ 10.4
YBX3P16989 MDN1-202ENST00000439638 3654 ntTSL 513.98□□□□□ -0.179e-6■□□□□ 10.4
YBX3P16989 DMAC2-207ENST00000589503 2317 ntTSL 213.69□□□□□ -0.229e-6■□□□□ 10.4
YBX3P16989 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.319e-6■□□□□ 10.4
YBX3P16989 PPRC1-205ENST00000489648 744 ntTSL 513.02□□□□□ -0.339e-6■□□□□ 10.4
YBX3P16989 UBE2G1-201ENST00000396981 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.359e-6■□□□□ 10.4
YBX3P16989 ZNF542P-207ENST00000495307 3393 ntTSL 1 (best) BASIC12.81□□□□□ -0.369e-6■□□□□ 10.4
YBX3P16989 TCOF1-205ENST00000439160 4644 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.389e-6■□□□□ 10.4
YBX3P16989 TMEM120A-212ENST00000486865 306 ntTSL 312.68□□□□□ -0.389e-6■□□□□ 10.4
YBX3P16989 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.399e-6■□□□□ 10.4
YBX3P16989 PPRC1-202ENST00000370012 2163 ntTSL 1 (best) BASIC12.53□□□□□ -0.49e-6■□□□□ 10.4
YBX3P16989 FAM208B-209ENST00000487196 576 ntTSL 312.5□□□□□ -0.419e-6■□□□□ 10.4
YBX3P16989 SPOP-222ENST00000577134 421 ntTSL 212.3□□□□□ -0.449e-6■□□□□ 10.4
YBX3P16989 NUDT5-201ENST00000378927 1258 ntTSL 2 BASIC12.22□□□□□ -0.459e-6■□□□□ 10.4
YBX3P16989 TCOF1-203ENST00000394269 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.489e-6■□□□□ 10.4
YBX3P16989 MRPL27-202ENST00000442592 2441 ntTSL 2 BASIC12□□□□□ -0.499e-6■□□□□ 10.4
YBX3P16989 TCOF1-204ENST00000427724 4272 ntAPPRIS ALT2 TSL 511.61□□□□□ -0.559e-6■□□□□ 10.4
YBX3P16989 C1GALT1-204ENST00000429911 802 ntTSL 511.61□□□□□ -0.559e-6■□□□□ 10.4
YBX3P16989 CDC16-208ENST00000484907 1038 ntTSL 311.61□□□□□ -0.557e-12■□□□□ 10.4
YBX3P16989 TXNL1-201ENST00000217515 6894 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.69e-6■□□□□ 10.4
YBX3P16989 TRPV2-201ENST00000338560 2808 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.69e-6■□□□□ 10.4
YBX3P16989 TCOF1-211ENST00000513346 4646 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.69e-6■□□□□ 10.4
YBX3P16989 PRUNE1-201ENST00000271620 2997 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.629e-6■□□□□ 10.4
YBX3P16989 ZNF542P-206ENST00000490123 3440 ntTSL 1 (best)10.84□□□□□ -0.679e-6■□□□□ 10.4
YBX3P16989 SENP3-210ENST00000619785 634 ntTSL 310.47□□□□□ -0.739e-6■□□□□ 10.4
YBX3P16989 UBE2G1-202ENST00000571953 553 ntTSL 310.32□□□□□ -0.769e-6■□□□□ 10.4
YBX3P16989 PRUNE1-204ENST00000368936 2788 ntTSL 1 (best) BASIC10.28□□□□□ -0.769e-6■□□□□ 10.4
YBX3P16989 SENP3-203ENST00000580231 901 ntTSL 310.24□□□□□ -0.779e-6■□□□□ 10.4
YBX3P16989 PRUNE1-203ENST00000368935 2238 ntTSL 1 (best) BASIC10.1□□□□□ -0.799e-6■□□□□ 10.4
YBX3P16989 SPOP-221ENST00000572686 2135 nt10.01□□□□□ -0.819e-6■□□□□ 10.4
YBX3P16989 RAE1-206ENST00000452119 691 ntTSL 39.98□□□□□ -0.819e-6■□□□□ 10.4
YBX3P16989 TMEM120A-206ENST00000465494 509 ntTSL 39.66□□□□□ -0.869e-6■□□□□ 10.4
YBX3P16989 ANKRD37-206ENST00000511393 1444 ntTSL 29.29□□□□□ -0.929e-6■□□□□ 10.4
YBX3P16989 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC9.13□□□□□ -0.959e-6■□□□□ 10.4
YBX3P16989 CD47-204ENST00000471694 6796 ntTSL 1 (best)8.76□□□□□ -1.019e-6■□□□□ 10.4
YBX3P16989 SLC38A2-211ENST00000552414 566 ntTSL 38.36□□□□□ -1.079e-6■□□□□ 10.4
YBX3P16989 ANKRD37-202ENST00000506424 519 ntTSL 38.34□□□□□ -1.079e-6■□□□□ 10.4
YBX3P16989 ZNF542P-210ENST00000589844 945 ntTSL 28.04□□□□□ -1.129e-6■□□□□ 10.4
YBX3P16989 ANKRD37-205ENST00000511311 668 ntTSL 27.94□□□□□ -1.149e-6■□□□□ 10.4
YBX3P16989 SPOP-211ENST00000507551 932 ntTSL 37.75□□□□□ -1.179e-6■□□□□ 10.4
YBX3P16989 EIF5-219ENST00000561380 926 ntTSL 57.52□□□□□ -1.219e-6■□□□□ 10.4
YBX3P16989 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC7.4□□□□□ -1.227e-12■□□□□ 10.4
YBX3P16989 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC7.37□□□□□ -1.239e-6■□□□□ 10.4
YBX3P16989 ZNF542P-204ENST00000482727 1305 ntBASIC7.2□□□□□ -1.269e-6■□□□□ 10.4
YBX3P16989 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.269e-6■□□□□ 10.4
YBX3P16989 KIF5B-202ENST00000493889 494 ntTSL 27.15□□□□□ -1.269e-6■□□□□ 10.4
YBX3P16989 TXNL1-204ENST00000586262 3541 ntTSL 1 (best)7.1□□□□□ -1.279e-6■□□□□ 10.4
YBX3P16989 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC7.07□□□□□ -1.289e-6■□□□□ 10.4
YBX3P16989 DDX10-202ENST00000524979 794 ntTSL 36.81□□□□□ -1.329e-6■□□□□ 10.4
YBX3P16989 DDX10-206ENST00000534221 870 ntTSL 26.51□□□□□ -1.379e-6■□□□□ 10.4
YBX3P16989 NUDT5-205ENST00000444732 410 ntTSL 36.41□□□□□ -1.389e-6■□□□□ 10.4
YBX3P16989 FAM208B-203ENST00000459693 1841 ntTSL 1 (best)6.31□□□□□ -1.49e-6■□□□□ 10.4
YBX3P16989 EPCAM-206ENST00000490733 752 ntTSL 35.83□□□□□ -1.489e-6■□□□□ 10.4
YBX3P16989 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.78□□□□□ -1.649e-6■□□□□ 10.4
YBX3P16989 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.679e-6■□□□□ 10.4
YBX3P16989 SET-205ENST00000409104 962 ntTSL 5 BASIC11.15□□□□□ -0.627e-11■□□□□ 10.4
YBX3P16989 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.222e-10■□□□□ 10.4
YBX3P16989 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.242e-10■□□□□ 10.4
YBX3P16989 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.12e-9■□□□□ 10.4
YBX3P16989 PDXK-214ENST00000476084 602 ntTSL 330.54■■■□□ 2.482e-8■□□□□ 10.4
YBX3P16989 PDXK-212ENST00000470029 583 ntTSL 325.39■■□□□ 1.662e-8■□□□□ 10.4
YBX3P16989 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.05■■□□□ 1.282e-8■□□□□ 10.4
YBX3P16989 SERPINB1-205ENST00000490094 782 ntTSL 524.32■■□□□ 1.482e-8■□□□□ 10.4
YBX3P16989 SERPINB1-204ENST00000476896 872 ntTSL 519.68■□□□□ 0.742e-8■□□□□ 10.4
YBX3P16989 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.12e-8■□□□□ 10.4
YBX3P16989 RPS20-209ENST00000521289 737 ntTSL 515.4■□□□□ 0.062e-16■□□□□ 10.4
YBX3P16989 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.15■□□□□ 0.821e-8■□□□□ 10.4
YBX3P16989 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.94■□□□□ 0.784e-14■□□□□ 10.4
YBX3P16989 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.311e-6■□□□□ 10.4
YBX3P16989 ARID3A-205ENST00000587532 1016 ntTSL 525.44■■□□□ 1.669e-7■□□□□ 10.4
YBX3P16989 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.59e-7■□□□□ 10.4
YBX3P16989 ARID3A-203ENST00000585733 581 ntTSL 217.27■□□□□ 0.369e-7■□□□□ 10.4
YBX3P16989 ALDOA-215ENST00000565355 538 ntTSL 520.24■□□□□ 0.832e-75■□□□□ 10.3
YBX3P16989 RPL18-216ENST00000552851 691 ntTSL 517.46■□□□□ 0.391e-42■□□□□ 10.3
YBX3P16989 RPL18-210ENST00000550671 764 ntTSL 216.48■□□□□ 0.231e-42■□□□□ 10.3
YBX3P16989 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC25.02■■□□□ 1.68e-10■□□□□ 10.3
YBX3P16989 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.99■■□□□ 1.118e-10■□□□□ 10.3
YBX3P16989 PSMD8-208ENST00000592561 771 ntTSL 213.68□□□□□ -0.228e-10■□□□□ 10.3
YBX3P16989 PSMD8-203ENST00000590331 422 ntTSL 29.54□□□□□ -0.888e-10■□□□□ 10.3
YBX3P16989 RACK1-202ENST00000502548 1090 ntTSL 1 (best)16.88■□□□□ 0.299e-44■□□□□ 10.3
YBX3P16989 RACK1-208ENST00000503494 843 ntTSL 312.84□□□□□ -0.359e-44■□□□□ 10.3
YBX3P16989 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.292e-9■□□□□ 10.3
YBX3P16989 SAMD4B-206ENST00000596368 1176 ntTSL 5 BASIC14.96□□□□□ -0.012e-9■□□□□ 10.3
YBX3P16989 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.072e-9■□□□□ 10.3
YBX3P16989 SAMD4B-213ENST00000610417 3664 ntAPPRIS P3 TSL 2 BASIC11.31□□□□□ -0.62e-9■□□□□ 10.3
YBX3P16989 SAMD4B-214ENST00000611159 3662 ntTSL 5 BASIC11.31□□□□□ -0.62e-9■□□□□ 10.3
YBX3P16989 SAMD4B-210ENST00000600018 144 ntTSL 56.28□□□□□ -1.42e-9■□□□□ 10.3
YBX3P16989 NOP56-216ENST00000492135 1143 ntTSL 1 (best)18.55■□□□□ 0.562e-6■□□□□ 10.3
YBX3P16989 NOP56-220ENST00000616692 2662 ntTSL 1 (best)18.24■□□□□ 0.512e-6■□□□□ 10.3
YBX3P16989 NOP56-202ENST00000415272 1628 ntTSL 513.58□□□□□ -0.242e-6■□□□□ 10.3
Retrieved 100 of 29,075 protein–RNA pairs in 245.5 ms