RNA–Protein interactions for RNA: ENST00000619785.1

SENP3-210, Transcript of SUMO specific peptidase 3, humanhuman

TSL 3

Gene SENP3, Length 634 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-210ENST00000619785 CHIC1Q5VXU3 224 aa22.55■■□□□ 1.2
SENP3-210ENST00000619785 AEBP2Q6ZN18 517 aaPredicted RBP22.24■■□□□ 1.15
SENP3-210ENST00000619785 PHF23Q9BUL5 403 aaPredicted RBP19.87■□□□□ 0.77
SENP3-210ENST00000619785 NISCHQ9Y2I1 1504 aa18.94■□□□□ 0.62
SENP3-210ENST00000619785 SENP3Q9H4L4 574 aaPredicted RBP18.84■□□□□ 0.61
SENP3-210ENST00000619785 PLPPR3Q6T4P5 718 aa18.72■□□□□ 0.59
SENP3-210ENST00000619785 ADRA2BP18089 450 aa17.44■□□□□ 0.38
SENP3-210ENST00000619785 FOXD1Q16676 465 aa17.33■□□□□ 0.36
SENP3-210ENST00000619785 ABCC9O60706 1549 aa17.31■□□□□ 0.36
SENP3-210ENST00000619785 CCDC180Q9P1Z9 1646 aa17.3■□□□□ 0.36
SENP3-210ENST00000619785 PPP6R1Q9UPN7 881 aa17.28■□□□□ 0.36
SENP3-210ENST00000619785 KCNA4P22459 653 aa17.08■□□□□ 0.32
SENP3-210ENST00000619785 EHMT2Q96KQ7 1210 aa16.94■□□□□ 0.3
SENP3-210ENST00000619785 PIAS4Q8N2W9 510 aaPredicted RBP16.62■□□□□ 0.25
SENP3-210ENST00000619785 PPP4R3CPQ6ZMV5 832 aa16.58■□□□□ 0.24
SENP3-210ENST00000619785 DNAJC5BQ9UF47 199 aa16.58■□□□□ 0.24
SENP3-210ENST00000619785 RB1CC1Q8TDY2 1594 aa16.5■□□□□ 0.23
SENP3-210ENST00000619785 SLC4A1APQ9BWU0 796 aaKnown RBP16.47■□□□□ 0.23
SENP3-210ENST00000619785 NCBP3Q53F19 620 aaKnown RBP16.44■□□□□ 0.22
SENP3-210ENST00000619785 NACADO15069 1562 aa16.35■□□□□ 0.21
SENP3-210ENST00000619785 CSRNP3Q8WYN3 585 aa16.28■□□□□ 0.2
SENP3-210ENST00000619785 UNC13AQ9UPW8 1703 aa16.27■□□□□ 0.19
SENP3-210ENST00000619785 MYO15BQ96JP2 1530 aa16.14■□□□□ 0.17
SENP3-210ENST00000619785 NPM3O75607 178 aaKnown RBP16.12■□□□□ 0.17
SENP3-210ENST00000619785 BICRAQ9NZM4 1560 aa16.11■□□□□ 0.17
SENP3-210ENST00000619785 SCAF1Q9H7N4 1312 aaKnown RBP15.96■□□□□ 0.15
SENP3-210ENST00000619785 PABPN1Q86U42 306 aaKnown RBP eCLIP15.95■□□□□ 0.14
SENP3-210ENST00000619785 CNKSR2Q8WXI2 1034 aa15.95■□□□□ 0.14
SENP3-210ENST00000619785 SHROOM4Q9ULL8 1493 aa15.95■□□□□ 0.14
SENP3-210ENST00000619785 CC2D2AQ9P2K1 1620 aa15.77■□□□□ 0.12
SENP3-210ENST00000619785 DCAF1Q9Y4B6 1507 aa15.77■□□□□ 0.11
SENP3-210ENST00000619785 MSH5O43196 834 aa15.74■□□□□ 0.11
SENP3-210ENST00000619785 CECR2Q9BXF3 1484 aa15.7■□□□□ 0.1
SENP3-210ENST00000619785 ZBTB22O15209 634 aa15.68■□□□□ 0.1
SENP3-210ENST00000619785 EIF4G1Q04637 1599 aaKnown RBP15.67■□□□□ 0.1
SENP3-210ENST00000619785 DCAF8L2P0C7V8 631 aa15.66■□□□□ 0.1
SENP3-210ENST00000619785 ZCCHC6Q5VYS8 1495 aaKnown RBP15.65■□□□□ 0.1
SENP3-210ENST00000619785 DNAJC5Q9H3Z4 198 aa15.53■□□□□ 0.08
SENP3-210ENST00000619785 FOXD4L1Q9NU39 408 aa15.53■□□□□ 0.08
SENP3-210ENST00000619785 MAPK8IP2Q13387 824 aaPredicted RBP15.49■□□□□ 0.07
SENP3-210ENST00000619785 SCRIBQ14160 1630 aa15.49■□□□□ 0.07
SENP3-210ENST00000619785 RNF216Q9NWF9 866 aaPredicted RBP15.42■□□□□ 0.06
SENP3-210ENST00000619785 CUX2O14529 1486 aa15.25■□□□□ 0.03
SENP3-210ENST00000619785 DMRT2Q9Y5R5 561 aa15.13■□□□□ 0.01
SENP3-210ENST00000619785 HOXD11P31277 338 aaPredicted RBP15.11■□□□□ 0.01
SENP3-210ENST00000619785 NCAPD3P42695 1498 aa15.08■□□□□ 0.01
SENP3-210ENST00000619785 HMGXB3Q12766 1538 aa14.98□□□□□ -0.01
SENP3-210ENST00000619785 SLC4A2P04920 1241 aa14.98□□□□□ -0.01
SENP3-210ENST00000619785 ERCC6Q03468 1493 aa14.95□□□□□ -0.02
SENP3-210ENST00000619785 MYCNP04198 464 aaPredicted RBP14.92□□□□□ -0.02
SENP3-210ENST00000619785 ATAD2BQ9ULI0 1458 aa14.92□□□□□ -0.02
SENP3-210ENST00000619785 THOC2Q8NI27 1593 aaKnown RBP14.91□□□□□ -0.02
SENP3-210ENST00000619785 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
SENP3-210ENST00000619785 ATXN8OSP0DMR3 200 aa14.9□□□□□ -0.02
SENP3-210ENST00000619785 SMARCA4P51532 1647 aa14.87□□□□□ -0.03
SENP3-210ENST00000619785 AMER1Q5JTC6 1135 aaPredicted RBP14.86□□□□□ -0.03
SENP3-210ENST00000619785 PEG3Q9GZU2 1588 aa14.85□□□□□ -0.03
SENP3-210ENST00000619785 NESP48681 1621 aa14.82□□□□□ -0.04
SENP3-210ENST00000619785 LAMC3Q9Y6N6 1575 aa14.81□□□□□ -0.04
SENP3-210ENST00000619785 RTN4Q9NQC3 1192 aaKnown RBP14.79□□□□□ -0.04
SENP3-210ENST00000619785 KIF21AQ7Z4S6 1674 aa14.75□□□□□ -0.05
SENP3-210ENST00000619785 FKBP8Q14318 412 aa14.74□□□□□ -0.05
SENP3-210ENST00000619785 BAZ1AQ9NRL2 1556 aaPredicted RBP14.73□□□□□ -0.05
SENP3-210ENST00000619785 SLC24A1O60721 1099 aa14.72□□□□□ -0.05
SENP3-210ENST00000619785 BAZ1BQ9UIG0 1483 aaKnown RBP14.7□□□□□ -0.06
SENP3-210ENST00000619785 WDR62O43379 1518 aa14.61□□□□□ -0.07
SENP3-210ENST00000619785 PDS5BQ9NTI5 1447 aa14.61□□□□□ -0.07
SENP3-210ENST00000619785 DCAF8L1A6NGE4 600 aa14.56□□□□□ -0.08
SENP3-210ENST00000619785 MRC2Q9UBG0 1479 aa14.55□□□□□ -0.08
SENP3-210ENST00000619785 MROH2BQ7Z745 1585 aa14.54□□□□□ -0.08
SENP3-210ENST00000619785 CADPSQ9ULU8 1353 aa14.51□□□□□ -0.09
SENP3-210ENST00000619785 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.51□□□□□ -0.09
SENP3-210ENST00000619785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.47□□□□□ -0.09
SENP3-210ENST00000619785 HNRNPUL2Q1KMD3 747 aaKnown RBP14.47□□□□□ -0.09
SENP3-210ENST00000619785 SAMD1Q6SPF0 538 aaPredicted RBP14.43□□□□□ -0.1
SENP3-210ENST00000619785 TRIM41Q8WV44 630 aa14.43□□□□□ -0.1
SENP3-210ENST00000619785 ATF5Q9Y2D1 282 aaPredicted RBP14.39□□□□□ -0.11
SENP3-210ENST00000619785 CEP164Q9UPV0 1460 aa14.38□□□□□ -0.11
SENP3-210ENST00000619785 WIZO95785 1651 aa14.36□□□□□ -0.11
SENP3-210ENST00000619785 CFTRP13569 1480 aa14.34□□□□□ -0.11
SENP3-210ENST00000619785 PRDM2Q13029 1718 aa14.34□□□□□ -0.11
SENP3-210ENST00000619785 FANCD2Q9BXW9 1451 aa14.33□□□□□ -0.12
SENP3-210ENST00000619785 RIMBP3CA6NJZ7 1639 aa14.31□□□□□ -0.12
SENP3-210ENST00000619785 RIMBP3BA6NNM3 1639 aa14.31□□□□□ -0.12
SENP3-210ENST00000619785 RIMBP3Q9UFD9 1639 aa14.31□□□□□ -0.12
SENP3-210ENST00000619785 OSCARQ8IYS5 282 aa14.3□□□□□ -0.12
SENP3-210ENST00000619785 URB2Q14146 1524 aaKnown RBP14.28□□□□□ -0.12
SENP3-210ENST00000619785 U3KPZ7 1027 aaPredicted RBP14.27□□□□□ -0.13
SENP3-210ENST00000619785 ARHGEF11O15085 1522 aa14.2□□□□□ -0.14
SENP3-210ENST00000619785 TOP2AP11388 1531 aaKnown RBP14.19□□□□□ -0.14
SENP3-210ENST00000619785 APLP2Q06481 763 aa14.16□□□□□ -0.14
SENP3-210ENST00000619785 IFT140Q96RY7 1462 aa14.14□□□□□ -0.15
SENP3-210ENST00000619785 ZNF219Q9P2Y4 722 aaPredicted RBP14.12□□□□□ -0.15
SENP3-210ENST00000619785 ZNF608Q9ULD9 1512 aaPredicted RBP14.1□□□□□ -0.15
SENP3-210ENST00000619785 EIF4G3O43432 1585 aaKnown RBP14.1□□□□□ -0.15
SENP3-210ENST00000619785 RSF1Q96T23 1441 aaPredicted RBP14.09□□□□□ -0.15
SENP3-210ENST00000619785 CHD1O14646 1710 aa14.09□□□□□ -0.15
SENP3-210ENST00000619785 TARBP1Q13395 1621 aaKnown RBP14.06□□□□□ -0.16
SENP3-210ENST00000619785 TOPBP1Q92547 1522 aa14.05□□□□□ -0.16
SENP3-210ENST00000619785 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms