Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC138649.4-201ENST00000612222 287 ntBASIC18.15■□□□□ 0.5
CTDNEP1O95476 AC004840.1-201ENST00000636359 365 ntBASIC18.15■□□□□ 0.5
CTDNEP1O95476 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 MROH4P-201ENST00000431302 1578 ntBASIC18.15■□□□□ 0.5
CTDNEP1O95476 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDNEP1O95476 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.14■□□□□ 0.5
CTDNEP1O95476 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDNEP1O95476 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CTDNEP1O95476 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDNEP1O95476 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDNEP1O95476 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AL133267.1-201ENST00000398220 340 ntBASIC18.14■□□□□ 0.49
CTDNEP1O95476 RPL5P21-201ENST00000404620 815 ntBASIC18.14■□□□□ 0.49
CTDNEP1O95476 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AC241585.1-201ENST00000433527 519 ntBASIC18.14■□□□□ 0.49
CTDNEP1O95476 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AC008738.7-201ENST00000609744 511 ntBASIC18.14■□□□□ 0.49
CTDNEP1O95476 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 AC093512.1-201ENST00000617969 520 ntBASIC18.14■□□□□ 0.49
CTDNEP1O95476 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDNEP1O95476 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDNEP1O95476 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AL391069.4-201ENST00000609583 481 ntBASIC18.13■□□□□ 0.49
CTDNEP1O95476 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDNEP1O95476 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CTDNEP1O95476 LINC02228-204ENST00000642115 2962 ntBASIC18.12■□□□□ 0.49
CTDNEP1O95476 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.12■□□□□ 0.49
CTDNEP1O95476 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.12■□□□□ 0.49
CTDNEP1O95476 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.12■□□□□ 0.49
CTDNEP1O95476 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
CTDNEP1O95476 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTDNEP1O95476 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTDNEP1O95476 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTDNEP1O95476 MRPS18AP1-201ENST00000414458 589 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms