Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 RNPS1P1-201ENST00000507437 918 ntBASIC13.72□□□□□ -0.21
SHISA3A0PJX4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 AC091304.2-201ENST00000564639 760 ntBASIC13.72□□□□□ -0.21
SHISA3A0PJX4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 FOXO1B-201ENST00000504678 1527 ntBASIC13.72□□□□□ -0.21
SHISA3A0PJX4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 BEND3P1-201ENST00000421591 1944 ntBASIC13.72□□□□□ -0.21
SHISA3A0PJX4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 AP000845.1-201ENST00000581677 2131 ntBASIC13.72□□□□□ -0.21
SHISA3A0PJX4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.72□□□□□ -0.21
SHISA3A0PJX4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AC004987.2-201ENST00000395959 1148 ntBASIC13.71□□□□□ -0.21
SHISA3A0PJX4 RPS8P6-201ENST00000426177 609 ntBASIC13.71□□□□□ -0.21
SHISA3A0PJX4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 HNRNPUP1-201ENST00000554987 333 ntBASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 MIR4751-201ENST00000578027 74 ntBASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SHISA3A0PJX4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.71□□□□□ -0.22
SHISA3A0PJX4 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms