Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.76■□□□□ 0.11
XRCC1P18887 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
XRCC1P18887 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
XRCC1P18887 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.76■□□□□ 0.11
XRCC1P18887 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
XRCC1P18887 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
XRCC1P18887 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
XRCC1P18887 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.76■□□□□ 0.11
XRCC1P18887 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
XRCC1P18887 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.76■□□□□ 0.11
XRCC1P18887 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.76■□□□□ 0.11
XRCC1P18887 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
XRCC1P18887 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
XRCC1P18887 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
XRCC1P18887 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
XRCC1P18887 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.76■□□□□ 0.11
XRCC1P18887 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
XRCC1P18887 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
XRCC1P18887 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.75■□□□□ 0.11
XRCC1P18887 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
XRCC1P18887 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 AL080243.2-201ENST00000418783 582 ntBASIC15.75■□□□□ 0.11
XRCC1P18887 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 FAM207CP-201ENST00000443486 507 ntBASIC15.75■□□□□ 0.11
XRCC1P18887 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.75■□□□□ 0.11
XRCC1P18887 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
XRCC1P18887 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
XRCC1P18887 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
XRCC1P18887 AC022144.1-201ENST00000602255 1580 ntBASIC15.75■□□□□ 0.11
XRCC1P18887 KRT8P12-202ENST00000472924 1397 ntBASIC15.75■□□□□ 0.11
XRCC1P18887 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.74■□□□□ 0.11
XRCC1P18887 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
XRCC1P18887 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.74■□□□□ 0.11
XRCC1P18887 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.74■□□□□ 0.11
XRCC1P18887 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.74■□□□□ 0.11
XRCC1P18887 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.74■□□□□ 0.11
XRCC1P18887 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.74■□□□□ 0.11
XRCC1P18887 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.74■□□□□ 0.11
XRCC1P18887 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
XRCC1P18887 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
XRCC1P18887 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
XRCC1P18887 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
XRCC1P18887 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.74■□□□□ 0.11
XRCC1P18887 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
XRCC1P18887 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
XRCC1P18887 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
XRCC1P18887 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
XRCC1P18887 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.73■□□□□ 0.11
XRCC1P18887 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.73■□□□□ 0.11
XRCC1P18887 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms