Protein–RNA interactions for Protein: Q9Y3B4

SF3B6, Splicing factor 3B subunit 6, humanhuman

Known RBP Predictions only

Length 125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6Q9Y3B4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SF3B6Q9Y3B4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3B6Q9Y3B4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SF3B6Q9Y3B4 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3B6Q9Y3B4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.71■□□□□ 0.91
SF3B6Q9Y3B4 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 AL117328.2-201ENST00000624617 1940 ntBASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.7■□□□□ 0.9
SF3B6Q9Y3B4 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.69■□□□□ 0.9
SF3B6Q9Y3B4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.68■□□□□ 0.9
SF3B6Q9Y3B4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3B6Q9Y3B4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3B6Q9Y3B4 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.67■□□□□ 0.9
SF3B6Q9Y3B4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3B6Q9Y3B4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SF3B6Q9Y3B4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SF3B6Q9Y3B4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.67■□□□□ 0.9
SF3B6Q9Y3B4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SF3B6Q9Y3B4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SF3B6Q9Y3B4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.66■□□□□ 0.9
SF3B6Q9Y3B4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SF3B6Q9Y3B4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.66■□□□□ 0.9
SF3B6Q9Y3B4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SF3B6Q9Y3B4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
SF3B6Q9Y3B4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3B6Q9Y3B4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SF3B6Q9Y3B4 HLA-L-211ENST00000482052 1765 ntBASIC20.65■□□□□ 0.9
SF3B6Q9Y3B4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
SF3B6Q9Y3B4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SF3B6Q9Y3B4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3B6Q9Y3B4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
SF3B6Q9Y3B4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.64■□□□□ 0.9
SF3B6Q9Y3B4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SF3B6Q9Y3B4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3B6Q9Y3B4 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SF3B6Q9Y3B4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SF3B6Q9Y3B4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SF3B6Q9Y3B4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SF3B6Q9Y3B4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms