Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 AC097639.1-201ENST00000565519 1891 ntBASIC21.6■■□□□ 1.05
UBQLN3Q9H347 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
UBQLN3Q9H347 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
UBQLN3Q9H347 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.59■■□□□ 1.05
UBQLN3Q9H347 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
UBQLN3Q9H347 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
UBQLN3Q9H347 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
UBQLN3Q9H347 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
UBQLN3Q9H347 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
UBQLN3Q9H347 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
UBQLN3Q9H347 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.57■■□□□ 1.04
UBQLN3Q9H347 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
UBQLN3Q9H347 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
UBQLN3Q9H347 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 AL035685.1-201ENST00000636663 812 ntBASIC21.56■■□□□ 1.04
UBQLN3Q9H347 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
UBQLN3Q9H347 SLC6A10P-202ENST00000431994 2058 ntBASIC21.56■■□□□ 1.04
UBQLN3Q9H347 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
UBQLN3Q9H347 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.55■■□□□ 1.04
UBQLN3Q9H347 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.55■■□□□ 1.04
UBQLN3Q9H347 AL031848.2-201ENST00000607670 837 ntBASIC21.55■■□□□ 1.04
UBQLN3Q9H347 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
UBQLN3Q9H347 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
UBQLN3Q9H347 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
UBQLN3Q9H347 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
UBQLN3Q9H347 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UBQLN3Q9H347 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UBQLN3Q9H347 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
UBQLN3Q9H347 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UBQLN3Q9H347 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
UBQLN3Q9H347 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
UBQLN3Q9H347 AP003733.4-201ENST00000623785 1697 ntBASIC21.53■■□□□ 1.04
UBQLN3Q9H347 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 AC009299.2-201ENST00000482477 511 ntBASIC21.53■■□□□ 1.04
UBQLN3Q9H347 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
UBQLN3Q9H347 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UBQLN3Q9H347 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
UBQLN3Q9H347 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UBQLN3Q9H347 AL592295.1-201ENST00000400984 884 ntBASIC21.52■■□□□ 1.04
UBQLN3Q9H347 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.52■■□□□ 1.04
UBQLN3Q9H347 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UBQLN3Q9H347 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UBQLN3Q9H347 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
UBQLN3Q9H347 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.52■■□□□ 1.03
UBQLN3Q9H347 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBQLN3Q9H347 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBQLN3Q9H347 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBQLN3Q9H347 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.51■■□□□ 1.03
UBQLN3Q9H347 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBQLN3Q9H347 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
UBQLN3Q9H347 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.5■■□□□ 1.03
UBQLN3Q9H347 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 KRT18P24-201ENST00000344739 1156 ntBASIC21.5■■□□□ 1.03
UBQLN3Q9H347 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
UBQLN3Q9H347 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 LINC01124-201ENST00000409786 2117 ntBASIC21.49■■□□□ 1.03
UBQLN3Q9H347 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
UBQLN3Q9H347 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
UBQLN3Q9H347 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBQLN3Q9H347 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBQLN3Q9H347 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBQLN3Q9H347 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.47■■□□□ 1.03
UBQLN3Q9H347 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBQLN3Q9H347 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms