Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPAS1Q99742 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPAS1Q99742 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.28■■□□□ 1
NPAS1Q99742 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPAS1Q99742 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.28■■□□□ 1
NPAS1Q99742 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.28■■□□□ 1
NPAS1Q99742 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.28■■□□□ 1
NPAS1Q99742 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.27■■□□□ 1
NPAS1Q99742 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPAS1Q99742 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.27■■□□□ 1
NPAS1Q99742 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.27■■□□□ 1
NPAS1Q99742 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NPAS1Q99742 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.27■■□□□ 1
NPAS1Q99742 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NPAS1Q99742 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.26■□□□□ 0.99
NPAS1Q99742 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPAS1Q99742 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPAS1Q99742 AC142381.3-201ENST00000568208 1670 ntBASIC21.26■□□□□ 0.99
NPAS1Q99742 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.26■□□□□ 0.99
NPAS1Q99742 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.26■□□□□ 0.99
NPAS1Q99742 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPAS1Q99742 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.26■□□□□ 0.99
NPAS1Q99742 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.26■□□□□ 0.99
NPAS1Q99742 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
NPAS1Q99742 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPAS1Q99742 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.26■□□□□ 0.99
NPAS1Q99742 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPAS1Q99742 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
NPAS1Q99742 YBX1P4-201ENST00000392794 808 ntBASIC21.25■□□□□ 0.99
NPAS1Q99742 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
NPAS1Q99742 AC120024.1-201ENST00000562672 995 ntBASIC21.24■□□□□ 0.99
NPAS1Q99742 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
NPAS1Q99742 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.24■□□□□ 0.99
NPAS1Q99742 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.23■□□□□ 0.99
NPAS1Q99742 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPAS1Q99742 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.23■□□□□ 0.99
NPAS1Q99742 AC022616.5-201ENST00000518796 181 ntBASIC21.23■□□□□ 0.99
NPAS1Q99742 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPAS1Q99742 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NPAS1Q99742 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.22■□□□□ 0.99
NPAS1Q99742 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS1Q99742 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS1Q99742 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.22■□□□□ 0.99
NPAS1Q99742 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS1Q99742 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPAS1Q99742 MIR6089-201ENST00000616698 64 ntBASIC21.22■□□□□ 0.99
NPAS1Q99742 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS1Q99742 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPAS1Q99742 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS1Q99742 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS1Q99742 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.22■□□□□ 0.99
NPAS1Q99742 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS1Q99742 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS1Q99742 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS1Q99742 AC090877.2-201ENST00000558441 1738 ntBASIC21.21■□□□□ 0.99
NPAS1Q99742 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
NPAS1Q99742 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS1Q99742 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS1Q99742 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS1Q99742 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
NPAS1Q99742 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.2■□□□□ 0.98
NPAS1Q99742 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NPAS1Q99742 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS1Q99742 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS1Q99742 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS1Q99742 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS1Q99742 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPAS1Q99742 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.19■□□□□ 0.98
NPAS1Q99742 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS1Q99742 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS1Q99742 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPAS1Q99742 AL451085.2-201ENST00000605085 799 ntBASIC21.19■□□□□ 0.98
NPAS1Q99742 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.19■□□□□ 0.98
NPAS1Q99742 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPAS1Q99742 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.19■□□□□ 0.98
NPAS1Q99742 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPAS1Q99742 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS1Q99742 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS1Q99742 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS1Q99742 KRT18P24-201ENST00000344739 1156 ntBASIC21.18■□□□□ 0.98
NPAS1Q99742 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.18■□□□□ 0.98
NPAS1Q99742 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS1Q99742 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS1Q99742 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.18■□□□□ 0.98
NPAS1Q99742 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.18■□□□□ 0.98
NPAS1Q99742 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS1Q99742 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS1Q99742 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS1Q99742 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
NPAS1Q99742 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
NPAS1Q99742 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
NPAS1Q99742 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS1Q99742 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS1Q99742 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms