Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 AC135279.3-201ENST00000610945 1311 ntBASIC7.12□□□□□ -1.27
SYNE1Q8NF91 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 GAK-223ENST00000628912 497 ntTSL 5 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 RASSF1-AS1-201ENST00000629828 790 ntBASIC7.12□□□□□ -1.27
SYNE1Q8NF91 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 ERN1-208ENST00000606895 2068 ntBASIC7.11□□□□□ -1.27
SYNE1Q8NF91 GUK1-205ENST00000366722 850 ntTSL 3 BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC7.11□□□□□ -1.27
SYNE1Q8NF91 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 RARRES2P6-201ENST00000567333 442 ntBASIC7.1□□□□□ -1.27
SYNE1Q8NF91 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 AC092666.2-201ENST00000613287 246 ntBASIC7.1□□□□□ -1.27
SYNE1Q8NF91 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 TSPY9P-201ENST00000440215 945 ntBASIC7.1□□□□□ -1.27
SYNE1Q8NF91 TSPY11P-201ENST00000442607 1045 ntBASIC7.1□□□□□ -1.27
SYNE1Q8NF91 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
SYNE1Q8NF91 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 FOXO3B-201ENST00000395675 1928 ntBASIC7.09□□□□□ -1.27
SYNE1Q8NF91 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 TRIR-202ENST00000588213 841 ntTSL 3 BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 MTDHP2-201ENST00000601468 714 ntBASIC7.09□□□□□ -1.27
SYNE1Q8NF91 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SYNE1Q8NF91 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.28
SYNE1Q8NF91 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC7.09□□□□□ -1.28
SYNE1Q8NF91 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.28
SYNE1Q8NF91 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
SYNE1Q8NF91 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 AL512631.2-201ENST00000604634 923 ntBASIC7.08□□□□□ -1.28
SYNE1Q8NF91 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC7.08□□□□□ -1.28
SYNE1Q8NF91 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms