Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC144BQ3MJ40 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC144BQ3MJ40 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC144BQ3MJ40 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
CCDC144BQ3MJ40 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 AC021242.3-201ENST00000607598 1377 ntBASIC27.06■■□□□ 1.92
CCDC144BQ3MJ40 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CCDC144BQ3MJ40 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC144BQ3MJ40 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
CCDC144BQ3MJ40 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
CCDC144BQ3MJ40 TSPY9P-201ENST00000440215 945 ntBASIC27.03■■□□□ 1.92
CCDC144BQ3MJ40 TSPY11P-201ENST00000442607 1045 ntBASIC27.03■■□□□ 1.92
CCDC144BQ3MJ40 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC27.02■■□□□ 1.92
CCDC144BQ3MJ40 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC144BQ3MJ40 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC144BQ3MJ40 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC144BQ3MJ40 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC144BQ3MJ40 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC144BQ3MJ40 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.02■■□□□ 1.92
CCDC144BQ3MJ40 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC27.01■■□□□ 1.91
CCDC144BQ3MJ40 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC27■■□□□ 1.91
CCDC144BQ3MJ40 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC27■■□□□ 1.91
CCDC144BQ3MJ40 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
CCDC144BQ3MJ40 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC27■■□□□ 1.91
CCDC144BQ3MJ40 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC27■■□□□ 1.91
CCDC144BQ3MJ40 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27■■□□□ 1.91
CCDC144BQ3MJ40 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
CCDC144BQ3MJ40 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC144BQ3MJ40 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.98■■□□□ 1.91
CCDC144BQ3MJ40 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.98■■□□□ 1.91
CCDC144BQ3MJ40 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.98■■□□□ 1.91
CCDC144BQ3MJ40 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC144BQ3MJ40 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.98■■□□□ 1.91
CCDC144BQ3MJ40 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.98■■□□□ 1.91
CCDC144BQ3MJ40 PREB-202ENST00000406567 1910 ntTSL 5 BASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 AC092028.1-203ENST00000608262 953 ntBASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.97■■□□□ 1.91
CCDC144BQ3MJ40 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 MIR4281-201ENST00000580852 62 ntBASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.96■■□□□ 1.91
CCDC144BQ3MJ40 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC144BQ3MJ40 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.95■■□□□ 1.9
CCDC144BQ3MJ40 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC144BQ3MJ40 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC144BQ3MJ40 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms