Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN1P58418 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN1P58418 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN1P58418 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CLRN1P58418 LONRF2P2-201ENST00000439212 571 ntBASIC20.79■□□□□ 0.92
CLRN1P58418 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN1P58418 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.79■□□□□ 0.92
CLRN1P58418 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN1P58418 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLRN1P58418 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.78■□□□□ 0.92
CLRN1P58418 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLRN1P58418 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLRN1P58418 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLRN1P58418 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
CLRN1P58418 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
CLRN1P58418 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLRN1P58418 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLRN1P58418 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CLRN1P58418 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLRN1P58418 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
CLRN1P58418 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLRN1P58418 AC093323.1-202ENST00000635031 2045 ntBASIC20.77■□□□□ 0.92
CLRN1P58418 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLRN1P58418 TSPY13P-201ENST00000338964 914 ntBASIC20.77■□□□□ 0.92
CLRN1P58418 AC012354.3-201ENST00000623734 483 ntBASIC20.77■□□□□ 0.92
CLRN1P58418 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLRN1P58418 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLRN1P58418 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.76■□□□□ 0.91
CLRN1P58418 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.76■□□□□ 0.91
CLRN1P58418 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.76■□□□□ 0.91
CLRN1P58418 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLRN1P58418 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLRN1P58418 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLRN1P58418 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.76■□□□□ 0.91
CLRN1P58418 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLRN1P58418 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
CLRN1P58418 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLRN1P58418 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
CLRN1P58418 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLRN1P58418 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLRN1P58418 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.75■□□□□ 0.91
CLRN1P58418 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLRN1P58418 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CLRN1P58418 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.75■□□□□ 0.91
CLRN1P58418 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.74■□□□□ 0.91
CLRN1P58418 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLRN1P58418 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLRN1P58418 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLRN1P58418 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLRN1P58418 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.74■□□□□ 0.91
CLRN1P58418 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CLRN1P58418 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLRN1P58418 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CLRN1P58418 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN1P58418 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.73■□□□□ 0.91
CLRN1P58418 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN1P58418 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.73■□□□□ 0.91
CLRN1P58418 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN1P58418 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.73■□□□□ 0.91
CLRN1P58418 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.73■□□□□ 0.91
CLRN1P58418 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CLRN1P58418 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN1P58418 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN1P58418 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLRN1P58418 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLRN1P58418 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.72■□□□□ 0.91
CLRN1P58418 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CLRN1P58418 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CLRN1P58418 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLRN1P58418 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.72■□□□□ 0.91
CLRN1P58418 AC090877.2-201ENST00000558441 1738 ntBASIC20.72■□□□□ 0.91
CLRN1P58418 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 AC019171.1-201ENST00000601251 1056 ntBASIC20.71■□□□□ 0.91
CLRN1P58418 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 AC074183.2-201ENST00000623112 922 ntBASIC20.71■□□□□ 0.91
CLRN1P58418 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CLRN1P58418 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 HLA-L-211ENST00000482052 1765 ntBASIC20.71■□□□□ 0.91
CLRN1P58418 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN1P58418 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.71■□□□□ 0.91
CLRN1P58418 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CLRN1P58418 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLRN1P58418 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.7■□□□□ 0.9
CLRN1P58418 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.7■□□□□ 0.9
CLRN1P58418 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN1P58418 LINC00543-201ENST00000567234 1845 ntBASIC20.69■□□□□ 0.9
CLRN1P58418 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CLRN1P58418 AC141586.4-201ENST00000624558 1573 ntBASIC20.69■□□□□ 0.9
CLRN1P58418 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN1P58418 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.69■□□□□ 0.9
CLRN1P58418 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN1P58418 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CLRN1P58418 AL033527.3-201ENST00000566366 1196 ntBASIC20.69■□□□□ 0.9
CLRN1P58418 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.69■□□□□ 0.9
CLRN1P58418 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms