Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TPM1P09493 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
TPM1P09493 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
TPM1P09493 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
TPM1P09493 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.58■■□□□ 1.69
TPM1P09493 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.58■■□□□ 1.69
TPM1P09493 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
TPM1P09493 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.58■■□□□ 1.69
TPM1P09493 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
TPM1P09493 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
TPM1P09493 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
TPM1P09493 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
TPM1P09493 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.57■■□□□ 1.68
TPM1P09493 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TPM1P09493 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.57■■□□□ 1.68
TPM1P09493 AL157400.5-201ENST00000507624 621 ntBASIC25.57■■□□□ 1.68
TPM1P09493 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.57■■□□□ 1.68
TPM1P09493 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TPM1P09493 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.56■■□□□ 1.68
TPM1P09493 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TPM1P09493 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TPM1P09493 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
TPM1P09493 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.56■■□□□ 1.68
TPM1P09493 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
TPM1P09493 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.56■■□□□ 1.68
TPM1P09493 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
TPM1P09493 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TPM1P09493 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TPM1P09493 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TPM1P09493 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TPM1P09493 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TPM1P09493 AC004812.2-201ENST00000611079 2094 ntBASIC25.55■■□□□ 1.68
TPM1P09493 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TPM1P09493 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.54■■□□□ 1.68
TPM1P09493 SMPD5-203ENST00000639008 1464 ntBASIC25.54■■□□□ 1.68
TPM1P09493 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TPM1P09493 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.54■■□□□ 1.68
TPM1P09493 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
TPM1P09493 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
TPM1P09493 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TPM1P09493 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TPM1P09493 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TPM1P09493 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TPM1P09493 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TPM1P09493 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.53■■□□□ 1.68
TPM1P09493 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TPM1P09493 DUSP8P5-201ENST00000422884 1815 ntBASIC25.53■■□□□ 1.68
TPM1P09493 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TPM1P09493 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TPM1P09493 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.52■■□□□ 1.68
TPM1P09493 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TPM1P09493 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
TPM1P09493 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.51■■□□□ 1.67
TPM1P09493 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
TPM1P09493 AC016575.1-201ENST00000607026 382 ntBASIC25.51■■□□□ 1.67
TPM1P09493 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TPM1P09493 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TPM1P09493 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.51■■□□□ 1.67
TPM1P09493 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
TPM1P09493 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
TPM1P09493 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TPM1P09493 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
TPM1P09493 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TPM1P09493 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
TPM1P09493 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.5■■□□□ 1.67
TPM1P09493 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.5■■□□□ 1.67
TPM1P09493 CLDN5-201ENST00000403084 2357 ntBASIC25.49■■□□□ 1.67
TPM1P09493 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
TPM1P09493 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
TPM1P09493 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
TPM1P09493 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
TPM1P09493 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC25.49■■□□□ 1.67
TPM1P09493 ABHD17AP4-201ENST00000411545 909 ntBASIC25.49■■□□□ 1.67
TPM1P09493 AC060814.1-201ENST00000554326 538 ntBASIC25.49■■□□□ 1.67
TPM1P09493 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
TPM1P09493 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC25.49■■□□□ 1.67
TPM1P09493 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
TPM1P09493 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TPM1P09493 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.48■■□□□ 1.67
TPM1P09493 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.48■■□□□ 1.67
TPM1P09493 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.48■■□□□ 1.67
TPM1P09493 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.48■■□□□ 1.67
TPM1P09493 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.48■■□□□ 1.67
TPM1P09493 ABCB10P4-201ENST00000566803 2184 ntBASIC25.48■■□□□ 1.67
TPM1P09493 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.47■■□□□ 1.67
TPM1P09493 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
TPM1P09493 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
TPM1P09493 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
TPM1P09493 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TPM1P09493 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
TPM1P09493 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC25.47■■□□□ 1.67
TPM1P09493 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
TPM1P09493 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TPM1P09493 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
TPM1P09493 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
TPM1P09493 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
TPM1P09493 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
TPM1P09493 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
TPM1P09493 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.46■■□□□ 1.67
TPM1P09493 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms