Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AC093214.1-201ENST00000511688 1107 ntBASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AC044860.1-202ENST00000559481 777 ntBASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 SPCS2P1-201ENST00000561636 679 ntBASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AL109936.8-201ENST00000641772 604 ntBASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AC087481.3-201ENST00000602886 1894 ntBASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 PPT1-215ENST00000641471 2368 ntBASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4BQ9Y4P1 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 SDHAP3-202ENST00000515467 728 ntBASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.91□□□□□ -0.02
ATG4BQ9Y4P1 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms