Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 AL607033.1-201ENST00000623900 1599 ntBASIC16.45■□□□□ 0.22
CDH6P55285 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH6P55285 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CDH6P55285 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH6P55285 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH6P55285 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH6P55285 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH6P55285 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH6P55285 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH6P55285 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDH6P55285 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CDH6P55285 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.44■□□□□ 0.22
CDH6P55285 KRT8P12-202ENST00000472924 1397 ntBASIC16.44■□□□□ 0.22
CDH6P55285 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CDH6P55285 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CDH6P55285 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 FO393414.2-201ENST00000405153 598 ntBASIC16.44■□□□□ 0.22
CDH6P55285 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 AC136604.1-201ENST00000418535 575 ntBASIC16.44■□□□□ 0.22
CDH6P55285 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.44■□□□□ 0.22
CDH6P55285 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH6P55285 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH6P55285 HIST3H2BA-201ENST00000436555 524 ntBASIC16.44■□□□□ 0.22
CDH6P55285 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.44■□□□□ 0.22
CDH6P55285 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.44■□□□□ 0.22
CDH6P55285 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH6P55285 AL079307.3-201ENST00000556114 283 ntBASIC16.44■□□□□ 0.22
CDH6P55285 AL589739.1-201ENST00000607720 493 ntBASIC16.44■□□□□ 0.22
CDH6P55285 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH6P55285 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH6P55285 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDH6P55285 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CDH6P55285 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH6P55285 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
CDH6P55285 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH6P55285 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
CDH6P55285 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 AL139400.1-201ENST00000366220 510 ntBASIC16.43■□□□□ 0.22
CDH6P55285 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH6P55285 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH6P55285 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 AC025678.2-201ENST00000562061 970 ntBASIC16.43■□□□□ 0.22
CDH6P55285 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 GPALPP1-207ENST00000611650 899 ntBASIC16.43■□□□□ 0.22
CDH6P55285 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH6P55285 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH6P55285 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH6P55285 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH6P55285 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH6P55285 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CDH6P55285 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms