Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 RNA5SP410-201ENST00000516285 106 ntBASIC16.94■□□□□ 0.3
VCPP55072 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.94■□□□□ 0.3
VCPP55072 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.94■□□□□ 0.3
VCPP55072 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 MIR6869-201ENST00000619434 62 ntBASIC16.94■□□□□ 0.3
VCPP55072 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.94■□□□□ 0.3
VCPP55072 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.94■□□□□ 0.3
VCPP55072 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 AC103702.1-201ENST00000548801 2630 ntBASIC16.94■□□□□ 0.3
VCPP55072 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VCPP55072 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.93■□□□□ 0.3
VCPP55072 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.93■□□□□ 0.3
VCPP55072 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.93■□□□□ 0.3
VCPP55072 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VCPP55072 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VCPP55072 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.93■□□□□ 0.3
VCPP55072 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VCPP55072 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.93■□□□□ 0.3
VCPP55072 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.93■□□□□ 0.3
VCPP55072 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VCPP55072 U82695.1-201ENST00000635752 1889 ntBASIC16.93■□□□□ 0.3
VCPP55072 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VCPP55072 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.92■□□□□ 0.3
VCPP55072 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
VCPP55072 MIR1908-201ENST00000410394 80 ntBASIC16.92■□□□□ 0.3
VCPP55072 AC093724.1-201ENST00000448659 1027 ntBASIC16.92■□□□□ 0.3
VCPP55072 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 SPDYE18-201ENST00000510091 1050 ntBASIC16.92■□□□□ 0.3
VCPP55072 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.92■□□□□ 0.3
VCPP55072 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.92■□□□□ 0.3
VCPP55072 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.92■□□□□ 0.3
VCPP55072 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.92■□□□□ 0.3
VCPP55072 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms