Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MSX1P28360 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.49□□□□□ -0.09
MSX1P28360 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX1P28360 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 SDHAP3-202ENST00000515467 728 ntBASIC14.48□□□□□ -0.09
MSX1P28360 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.48□□□□□ -0.09
MSX1P28360 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.48□□□□□ -0.09
MSX1P28360 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.48□□□□□ -0.09
MSX1P28360 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.48□□□□□ -0.09
MSX1P28360 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 TP53TG3HP-202ENST00000569755 579 ntBASIC14.48□□□□□ -0.09
MSX1P28360 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX1P28360 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX1P28360 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX1P28360 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.47□□□□□ -0.09
MSX1P28360 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX1P28360 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
MSX1P28360 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
MSX1P28360 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX1P28360 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.47□□□□□ -0.09
MSX1P28360 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
MSX1P28360 AKR1B10P2-201ENST00000577332 927 ntBASIC14.47□□□□□ -0.09
MSX1P28360 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.47□□□□□ -0.09
MSX1P28360 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.47□□□□□ -0.09
MSX1P28360 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.47□□□□□ -0.09
MSX1P28360 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.47□□□□□ -0.09
MSX1P28360 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
MSX1P28360 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MSX1P28360 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
MSX1P28360 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
MSX1P28360 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
MSX1P28360 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms